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Author SHA1 Message Date
Ryan Prior 03c51c0443
gnu: Add ruby-3.0. 
* gnu/packages/ruby.scm (ruby-3.0): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-29 18:51:15 +00:00
Mathieu Othacehe 0c8bb20b7c
gnu: r-ldheatmap: Fix missing variable. 
This is a follow-up of 61ec8928c7.

* gnu/packages/cran.scm (r-ldheatmap)[propagated-inputs]: Use 'module-ref' to
resolve r-snpstats variable which is located in (gnu package bioinformatics)
that cannot be included due to a circular dependency.
 2020-12-29 19:00:39 +01:00
zimoun 610cd6a170
gnu: r-ggbio: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-ggbio): Move from here...
* gnu/packages/bioconductor.scm (r-ggbio): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 81f481d6cd
gnu: r-gqtlstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 61ec8928c7
gnu: r-snpstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-snpstats): Move from here...
* gnu/packages/bioconductor.scm (r-snpstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun a2c66d18a5
gnu: r-homo-sapiens: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-homo-sapiens): Move from here...
* gnu/packages/bioconductor.scm (r-homo-sapiens): ...to here.
Replace 'string-append' by 'bioconductor-uri' with 'annotation'.
 2020-12-29 17:40:28 +01:00
zimoun 8c2b7c9a2a
gnu: r-erma: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-erma): Move from here...
* gnu/packages/bioconductor.scm (r-erma): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 8f1237c350
gnu: r-ldblock: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 9534e7b706
gnu: r-gqtlstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 2a4322f7c3
gnu: r-gviz: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gviz): Move from here...
* gnu/packages/bioconductor.scm (r-gviz): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 69a5e066c1
gnu: r-gwascat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 838db0de5e
gnu: r-sushi: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
 2020-12-29 17:40:25 +01:00
Marius Bakke 789bf7fcc2
gnu: uBlock Origin: Update to 1.32.4. 
* gnu/packages/browser-extensions.scm (uassets): Update to 8e79f25fc.
(ublock-origin): Update to 1.32.4.
 2020-12-29 17:34:14 +01:00
Wiktor Żelazny 7ba7881af6
gnu: Add r-mlr3. 
* gnu/packages/cran.scm (r-mlr3): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-29 14:39:55 +01:00
Wiktor Żelazny b32b625f0a
gnu: Add r-paradox. 
* gnu/packages/cran.scm (r-paradox): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-29 14:39:55 +01:00
Wiktor Żelazny dd35b58ce3
gnu: Add r-mlr3misc. 
* gnu/packages/cran.scm (r-mlr3misc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-29 14:39:55 +01:00
Wiktor Żelazny ffe1f205ea
gnu: Add r-mlr3measures. 
* gnu/packages/cran.scm (r-mlr3measures): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-29 14:39:51 +01:00
Wiktor Żelazny c5092b6d0f
gnu: Add r-lgr. 
* gnu/packages/cran.scm (r-lgr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-29 14:39:40 +01:00
Ricardo Wurmus 1d77141f6d
gnu: node: Fix npx shebang. 
* gnu/packages/node.scm (node)[arguments]: Add build phase
"patch-node-shebang".
 2020-12-29 14:26:52 +01:00
Ricardo Wurmus ac80cbfab6
gnu: Add js-context-menu. 
* gnu/packages/javascript.scm (js-context-menu): New variable.
 2020-12-29 14:26:52 +01:00
Leo Prikler a2d5f9f60d
gnu: gnome-maps: Patch DBUS service. 
* gnu/packages/geo.scm (gnome-maps):
[arguments]<#:phases>: Add patch-dbus-service.
 2020-12-29 13:54:49 +01:00
Leo Prikler e5c258b65a
gnu: python-cloudscraper: Drop interpreters at build time. 
* gnu/packages/python-web.scm (python-cloudscraper)[snippet]: Keep
interpreters.
[arguments]<#:phases>: Add drop-unsupported-sources.
 2020-12-29 13:54:49 +01:00
Leo Prikler 142f8713ab
gnu: Add shakespeare-spl. 
* gnu/packages/patches/shakespeare-spl-fix-grammar.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/esolangs.scm (shakespeare-spl): New variable.
 2020-12-29 13:54:48 +01:00
Caliph Nomble 219612904c
gnu: u-boot-rockpro64-rk3399: Fix freeze on boot. 
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]<#:phases>
[patch-rockpro64-config]: Build with modified config to prevent freeze on boot
due to usb being enabled.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-12-29 13:28:16 +01:00
Danny Milosavljevic 7d440cdbfd
Revert "gnu: u-boot: Fix freeze on boot with u-boot-rockpro64-rk3399." 
because it was applied to the wrong u-boot.

This reverts commit d980e6e275.
 2020-12-29 13:25:47 +01:00
Mathieu Othacehe 0ed631866c
gnu: rust: Remove "i686-linux" from supported systems. 
* gnu/packages/rust.scm (rust-1.19): Only support "x86_64-linux" architecture.
 2020-12-29 11:41:50 +01:00
Nicolas Goaziou f521104e34
gnu: snap: Update to 6.5.0. 
* gnu/packages/education.scm (snap): Update to 6.5.0.
 2020-12-29 11:03:57 +01:00
Nicolas Goaziou d13fe46703
gnu: frescobaldi: Update to 3.1.3. 
* gnu/packages/music.scm (frescobaldi): Update to 3.1.3.
 2020-12-29 10:59:29 +01:00
Vincent Legoll 038e396254
gnu: jasper: Update to 2.0.23. 
Fixes CVE-2020-27828.

* gnu/packages/image.scm (jasper): Update to 2.0.23.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-29 11:21:43 +02:00
Vincent Legoll 3a1cb921c9
gnu: redis: Unbundle jemalloc & reinstate most of the tests 
* gnu/packages/databases.scm (redis)[source]: Delete bundled jemalloc.
[native-inputs]: Add procps & tcl for the tests. [arguments]: substitute
the right tclsh binary & disable failing tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-29 10:51:48 +02:00
Vincent Legoll a7051a0e93
gnu: redis: Update to 6.0.9. 
* gnu/packages/databases.scm (redis): Update to 6.0.9.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-29 10:40:32 +02:00
Vincent Legoll c702f5dd70
gnu: v4l-utils: Update to 1.20.0. 
* gnu/packages/video.scm (v4l-utils): Update to 1.20.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-29 09:25:44 +02:00
Efraim Flashner 7700f8e976
gnu: libmicrohttpd: Update to 0.9.72. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.72.
 2020-12-29 09:03:35 +02:00
Leo Famulari 88205d2dea
gnu: borg: Update to 1.1.15. 
* gnu/packages/backup.scm (borg): Update to 1.1.15.
[source]: Update list of Cython-generated files to delete.
[arguments]: Skip another test.
 2020-12-29 01:28:10 -05:00
Leo Famulari 8727870ff4
gnu: Remove linux-libre 5.9. 
The 5.9 kernel series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-5.9-version, deblob-scripts-5.9,
linux-libre-5.9-pristine-source, linux-libre-5.9-source,
linux-libre-headers-5.9, linux-libre-5.9): Remove variables.
 2020-12-29 01:28:10 -05:00
Leo Famulari 1ab6ccb77d
gnu: linux-libre: Update to 5.10.3. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.3.
(linux-libre-5.10-pristine-source): Update hash.
 2020-12-29 01:28:10 -05:00
Maxim Cournoyer 0b27fdf8e8
gnu: Add emacs-eldev. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): New variable.
 2020-12-28 23:48:28 -05:00
Nicolas Goaziou 2283baae90
gnu: monolith: Update to 2.4.0. 
* gnu/packages/web.scm (monolith): Update to 2.4.0.
[arguments]: Add rust-regex Cargo input.  Move rust-reqwest from development
to regular Cargo inputs.
 2020-12-29 01:12:52 +01:00
Nicolas Goaziou 023ede836b
gnu: rust-sha2-0.9: Update to 0.9.2. 
* gnu/packages/crates-io.scm (rust-sha2-0.9): Update to 0.9.2.
[arguments]: Update rust-cfg-if Cargo input.
 2020-12-29 01:12:33 +01:00
Nicolas Goaziou bb8cf4dab4
gnu: rust-libc-0.2: Update to 0.2.81. 
* gnu/packages/crates-io.scm (rust-libc-0.2): Update to 0.2.81.
 2020-12-29 01:12:11 +01:00
Nicolas Goaziou e7094e9a5e
gnu: rust-reqwest-0.10: Update to 0.10.10. 
* gnu/packages/crates-io.scm (rust-reqwest-0.10): Update to 0.10.10.
[arguments]: Update rust-base64, rust-pin-project-lite, rust-serde-urlencoded,
rust-tokio-socks and rust-webpki-roots Cargo inputs. Add
rust-rustls-native-certs Cargo input. Add rust-wasm-bindgen-test Cargo
development input.
[native-inputs]: Add pkg-config.
[inputs]: Add openssl.
 2020-12-28 23:36:17 +01:00
Nicolas Goaziou 354190b613
gnu: Add rust-tokio-socks-0.3. 
* gnu/packages/crates-io.scm (rust-tokio-socks-0.3): New variable.
(rust-tokio-socks-0.2): Inherit from above.
 2020-12-28 22:44:01 +01:00
Nicolas Goaziou f4a687eef4
gnu: rust-trust-dns-openssl-0.19: Fix build. 
* gnu/packages/crates-io.scm (rust-trust-dns-openssl-0.19)[native-inputs]: Add
pkg-config.
[inputs]: Add openssl.
 2020-12-28 22:25:02 +01:00
Nicolas Goaziou ea436a04c8
gnu: rust-futures-0.3: Update to 0.3.8. 
* gnu/packages/crates-io.scm (rust-futures-0.3): Update to 0.3.8.
 2020-12-28 22:25:02 +01:00
Nicolas Goaziou 6a7f675d56
gnu: rust-futures-executor-0.3: Update to 0.3.8. 
* gnu/packages/crates-io.scm (rust-futures-executor-0.3): Update to 0.3.8.
 2020-12-28 22:25:01 +01:00
Nicolas Goaziou 943f67c7b0
gnu: rust-futures-util-0.3: Update to 0.3.8. 
* gnu/packages/crates-io.scm (rust-futures-util-0.3): Update to 0.3.8.
[arguments]: Add rust-pin-project-1 to Cargo inputs.  Disable tests.
 2020-12-28 22:25:01 +01:00
Nicolas Goaziou 6a52e6f042
gnu: Add rust-pin-project-1. 
* gnu/packages/crates-io.scm (rust-pin-project-1): New variable.
(rust-pin-project-0.4): Inherit from above.
 2020-12-28 22:25:00 +01:00
Nicolas Goaziou 2040d52f2c
gnu: Add rust-pin-project-internal-1. 
* gnu/packages/crates-io.scm (rust-pin-project-internal-1): New variable.
(rust-pin-project-internal-0.4): Inherit from above.
 2020-12-28 22:25:00 +01:00
Nicolas Goaziou 3f63125616
gnu: Add rust-pin-project-auxiliary-macro-0.0. 
* gnu/packages/crates-io.scm (rust-pin-project-auxiliary-macro-0.0): New variable.
 2020-12-28 22:24:59 +01:00
Nicolas Goaziou 4e3c1c65d9
gnu: rust-futures-macro-0.3: Update to 0.3.8. 
* gnu/packages/crates-io.scm (rust-futures-macro-0.3): Update to 0.3.8.
 2020-12-28 22:24:59 +01:00