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gnu: r-ldblock: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
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zimoun 2020-12-23 19:06:30 +01:00 committed by Ricardo Wurmus
parent 9534e7b706
commit 8f1237c350
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2 changed files with 34 additions and 34 deletions
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34
gnu/packages/bioconductor.scm
View file

@ -9405,6 +9405,40 @@ (define-public r-kegggraph
functionalities including parsing, graph operation, visualization and etc.")
(license license:gpl2+)))
(define-public r-ldblock
(package
(name "r-ldblock")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ldblock" version))
(sha256
(base32
"09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfiles" ,r-genomicfiles)
("r-httr" ,r-httr)
("r-matrix" ,r-matrix)
("r-rsamtools" ,r-rsamtools)
("r-snpstats" ,r-snpstats)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/ldblock")
(synopsis "Data structures for linkage disequilibrium measures in populations")
(description
"This package defines data structures for @dfn{linkage
disequilibrium} (LD) measures in populations. Its purpose is to simplify
handling of existing population-level data for the purpose of flexibly
defining LD blocks.")
(license license:artistic2.0)))
(define-public r-pathview
(package
(name "r-pathview")

34
gnu/packages/bioinformatics.scm
View file

@ -10695,40 +10695,6 @@ (define-public r-erma
by Ernst and Kellis.")
(license license:artistic2.0)))
(define-public r-ldblock
(package
(name "r-ldblock")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ldblock" version))
(sha256
(base32
"09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfiles" ,r-genomicfiles)
("r-httr" ,r-httr)
("r-matrix" ,r-matrix)
("r-rsamtools" ,r-rsamtools)
("r-snpstats" ,r-snpstats)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/ldblock")
(synopsis "Data structures for linkage disequilibrium measures in populations")
(description
"This package defines data structures for @dfn{linkage
disequilibrium} (LD) measures in populations. Its purpose is to simplify
handling of existing population-level data for the purpose of flexibly
defining LD blocks.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))