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gnu: r-gqtlstats: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
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zimoun 2020-12-23 19:06:29 +01:00 committed by Ricardo Wurmus
parent 2a4322f7c3
commit 9534e7b706
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GPG key ID: 197A5888235FACAC
2 changed files with 56 additions and 56 deletions
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56
gnu/packages/bioconductor.scm
View file

@ -9241,6 +9241,62 @@ (define-public r-catalyst
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
(define-public r-gqtlstats
(package
(name "r-gqtlstats")
(version "1.21.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLstats" version))
(sha256
(base32
"1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl"))))
(properties `((upstream-name . "gQTLstats")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
("r-beeswarm" ,r-beeswarm)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-doparallel" ,r-doparallel)
("r-dplyr" ,r-dplyr)
("r-erma" ,r-erma)
("r-ffbase" ,r-ffbase)
("r-foreach" ,r-foreach)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-ggbeeswarm" ,r-ggbeeswarm)
("r-ggplot2" ,r-ggplot2)
("r-gqtlbase" ,r-gqtlbase)
("r-hardyweinberg" ,r-hardyweinberg)
("r-homo-sapiens" ,r-homo-sapiens)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-mgcv" ,r-mgcv)
("r-plotly" ,r-plotly)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-snpstats" ,r-snpstats)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gQTLstats")
(synopsis "Computationally efficient analysis for eQTL and allied studies")
(description
"This package provides tools for the computationally efficient analysis
of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
The software in this package aims to support refinements and functional
interpretation of members of a collection of association statistics on a
family of feature/genome hypotheses.")
(license license:artistic2.0)))
(define-public r-gviz
(package
(name "r-gviz")

56
gnu/packages/bioinformatics.scm
View file

@ -10729,62 +10729,6 @@ (define-public r-ldblock
defining LD blocks.")
(license license:artistic2.0)))
(define-public r-gqtlstats
(package
(name "r-gqtlstats")
(version "1.21.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLstats" version))
(sha256
(base32
"1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl"))))
(properties `((upstream-name . "gQTLstats")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
("r-beeswarm" ,r-beeswarm)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-doparallel" ,r-doparallel)
("r-dplyr" ,r-dplyr)
("r-erma" ,r-erma)
("r-ffbase" ,r-ffbase)
("r-foreach" ,r-foreach)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-ggbeeswarm" ,r-ggbeeswarm)
("r-ggplot2" ,r-ggplot2)
("r-gqtlbase" ,r-gqtlbase)
("r-hardyweinberg" ,r-hardyweinberg)
("r-homo-sapiens" ,r-homo-sapiens)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-mgcv" ,r-mgcv)
("r-plotly" ,r-plotly)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-snpstats" ,r-snpstats)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gQTLstats")
(synopsis "Computationally efficient analysis for eQTL and allied studies")
(description
"This package provides tools for the computationally efficient analysis
of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
The software in this package aims to support refinements and functional
interpretation of members of a collection of association statistics on a
family of feature/genome hypotheses.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))