gnu: r-gqtlstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
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@ -9241,6 +9241,62 @@ (define-public r-catalyst
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standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
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(license license:gpl2+)))
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(define-public r-gqtlstats
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(package
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(name "r-gqtlstats")
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(version "1.21.3")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gQTLstats" version))
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(sha256
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(base32
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"1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl"))))
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(properties `((upstream-name . "gQTLstats")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-batchjobs" ,r-batchjobs)
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("r-bbmisc" ,r-bbmisc)
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("r-beeswarm" ,r-beeswarm)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-doparallel" ,r-doparallel)
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("r-dplyr" ,r-dplyr)
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("r-erma" ,r-erma)
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("r-ffbase" ,r-ffbase)
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("r-foreach" ,r-foreach)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicfiles" ,r-genomicfiles)
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("r-genomicranges" ,r-genomicranges)
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("r-ggbeeswarm" ,r-ggbeeswarm)
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("r-ggplot2" ,r-ggplot2)
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("r-gqtlbase" ,r-gqtlbase)
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("r-hardyweinberg" ,r-hardyweinberg)
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("r-homo-sapiens" ,r-homo-sapiens)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-mgcv" ,r-mgcv)
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("r-plotly" ,r-plotly)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-shiny" ,r-shiny)
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("r-snpstats" ,r-snpstats)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/gQTLstats")
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(synopsis "Computationally efficient analysis for eQTL and allied studies")
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(description
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"This package provides tools for the computationally efficient analysis
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of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
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The software in this package aims to support refinements and functional
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interpretation of members of a collection of association statistics on a
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family of feature/genome hypotheses.")
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(license license:artistic2.0)))
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(define-public r-gviz
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(package
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(name "r-gviz")
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@ -10729,62 +10729,6 @@ (define-public r-ldblock
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defining LD blocks.")
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(license license:artistic2.0)))
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(define-public r-gqtlstats
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(package
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(name "r-gqtlstats")
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(version "1.21.3")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gQTLstats" version))
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(sha256
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(base32
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"1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl"))))
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(properties `((upstream-name . "gQTLstats")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-batchjobs" ,r-batchjobs)
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("r-bbmisc" ,r-bbmisc)
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("r-beeswarm" ,r-beeswarm)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-doparallel" ,r-doparallel)
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("r-dplyr" ,r-dplyr)
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("r-erma" ,r-erma)
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("r-ffbase" ,r-ffbase)
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("r-foreach" ,r-foreach)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicfiles" ,r-genomicfiles)
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("r-genomicranges" ,r-genomicranges)
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("r-ggbeeswarm" ,r-ggbeeswarm)
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("r-ggplot2" ,r-ggplot2)
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("r-gqtlbase" ,r-gqtlbase)
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("r-hardyweinberg" ,r-hardyweinberg)
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("r-homo-sapiens" ,r-homo-sapiens)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-mgcv" ,r-mgcv)
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("r-plotly" ,r-plotly)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-shiny" ,r-shiny)
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("r-snpstats" ,r-snpstats)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/gQTLstats")
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(synopsis "Computationally efficient analysis for eQTL and allied studies")
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(description
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"This package provides tools for the computationally efficient analysis
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of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
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The software in this package aims to support refinements and functional
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interpretation of members of a collection of association statistics on a
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family of feature/genome hypotheses.")
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(license license:artistic2.0)))
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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