Ricardo Wurmus
c29d999a34
gnu: r-ancombc: Update to 2.0.1.
...
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
139da51753
gnu: Add r-mia.
...
* gnu/packages/bioconductor.scm (r-mia): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
90d8ac279f
gnu: Add r-treesummarizedexperiment.
...
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
efb965a4fa
gnu: Add r-cvxr.
...
* gnu/packages/cran.scm (r-cvxr): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
bde758150f
gnu: Add r-ecosolver.
...
* gnu/packages/cran.scm (r-ecosolver): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
697a0f8ca4
gnu: Add r-scs.
...
* gnu/packages/cran.scm (r-scs): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
8b1bee45f7
gnu: Add r-osqp.
...
* gnu/packages/cran.scm (r-osqp): New variable.
2022-11-24 18:02:15 +01:00
Mădălin Ionel Patrașcu
8d3bd8e4b0
gnu: Add r-ancombc.
...
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
2022-11-24 18:02:15 +01:00
Leo Famulari
a8c36bf8c4
gnu: linux-libre 4.19: Update to 4.19.266.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266.
(linux-libre-4.19-pristine-source): Update hash.
2022-11-24 11:25:51 -05:00
Ricardo Wurmus
fa59a22140
gnu: r-aims: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
2022-11-24 15:36:18 +01:00
Mădălin Ionel Patrașcu
2e85d26ebb
gnu: Add r-aims.
...
* gnu/packages/bioconductor.scm (r-aims): New variable.
2022-11-24 15:35:38 +01:00
Ricardo Wurmus
6f39e16124
gnu: r-alevinqc: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
2022-11-24 15:28:15 +01:00
Mădălin Ionel Patrașcu
5dc82a7f8b
gnu: Add r-alevinqc.
...
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
2022-11-24 15:22:28 +01:00
Ricardo Wurmus
610616d448
gnu: r-alphabeta: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
2022-11-24 15:13:50 +01:00
Mădălin Ionel Patrașcu
6c7f0849c1
gnu: Add r-alphabeta.
...
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
2022-11-24 15:09:13 +01:00
Ricardo Wurmus
c706a0a2af
gnu: r-asafe: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
2022-11-24 15:02:41 +01:00
Mădălin Ionel Patrașcu
01124e5a10
gnu: Add r-asafe.
...
* gnu/packages/bioconductor.scm (r-asafe): New variable.
2022-11-24 15:02:10 +01:00
Ricardo Wurmus
c2cba91ac9
gnu: r-arrayexpress: Update to 1.57.0.
...
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
2022-11-24 14:54:41 +01:00
Mădălin Ionel Patrașcu
13e8930efb
gnu: Add r-arrayexpress.
...
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
2022-11-24 14:53:09 +01:00
Ricardo Wurmus
f43a41d196
gnu: r-scuttle: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
a2ad5b53bf
gnu: r-rgreat: Update to 2.0.2.
...
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
8bfac375aa
gnu: r-bioccheck: Update to 1.34.2.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
f9747ecc2c
gnu: r-dose: Update to 3.24.2.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
a5ee462b7a
gnu: r-shortread: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
3bc54ddeab
gnu: r-chipseeker: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
d3696e71a9
gnu: r-deconvr: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
04340b27ba
gnu: r-bambu: Update to 3.0.2.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
4c0449ba8f
gnu: r-minimal: Simplify build phase.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Simplify phase
"remove-extraneous-references".
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
a8082fefe0
gnu: r-minimal: Use %store-directory instead of /gnu/store.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Use %store-directory
instead of hard-coding "/gnu/store" prefix.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
eeeca2341d
gnu: r-with-tests: Update to 4.2.2.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.2.
[arguments]: Patch DESCRIPTION file of "tools" package to avoid
non-deterministic line break.
2022-11-24 12:32:09 +01:00
Ricardo Wurmus
ffe149ccc5
gnu: r-with-tests: Drop labels from input lists.
...
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Drop input
labels.
[inputs]: Same.
(r-minimal)[arguments]: Remove lookup of "texlive" package.
2022-11-24 12:32:09 +01:00
Ricardo Wurmus
f3004710fa
gnu: r-ggtern: Update to 3.4.0.
...
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.0.
2022-11-24 12:32:09 +01:00
zimoun
54afdb3de1
gnu: r-phyloseq: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0.
2022-11-24 12:32:09 +01:00
zimoun
9988c60ea3
gnu: r-tximeta: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0.
2022-11-24 12:32:09 +01:00
zimoun
5140be4c81
gnu: r-tricycle: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0.
2022-11-24 12:32:09 +01:00
zimoun
7a33311bfd
gnu: r-tcgabiolinks: Update to 2.25.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3.
2022-11-24 12:32:09 +01:00
zimoun
dde0da5a95
gnu: r-biscuiteer: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0.
2022-11-24 12:32:09 +01:00
zimoun
926fe78f73
gnu: r-omnipathr: Update to 3.5.25.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25.
[propagated-inputs]: Add r-rmarkdown and r-rvest.
2022-11-24 12:32:08 +01:00
zimoun
3f58454739
gnu: r-omicade4: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.38.0.
2022-11-24 12:32:08 +01:00
zimoun
e524c12e06
gnu: r-dmrseq: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.0.
2022-11-24 12:32:08 +01:00
zimoun
95792cda89
gnu: r-dada2: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.26.0.
2022-11-24 12:32:08 +01:00
zimoun
c2c91d9dfe
gnu: r-bsseq: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.34.0.
2022-11-24 12:32:08 +01:00
zimoun
3b8df103f7
gnu: r-biotmle: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.22.0.
2022-11-24 12:32:08 +01:00
zimoun
3ed0a63106
gnu: r-biotip: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.12.0.
2022-11-24 12:32:08 +01:00
zimoun
f230df5f4f
gnu: r-bioqc: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.26.0.
2022-11-24 12:32:07 +01:00
zimoun
219b98fee9
gnu: r-bionetstat: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.18.0.
2022-11-24 12:32:07 +01:00
zimoun
01fb7c35e7
gnu: r-bionet: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.58.0.
2022-11-24 12:32:07 +01:00
zimoun
1118d6e856
gnu: r-bionero: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.0.
2022-11-24 12:32:07 +01:00
zimoun
858d9ccd9b
gnu: r-biomvrcns: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.38.0.
2022-11-24 12:32:07 +01:00
zimoun
c0412736d8
gnu: r-biomvcclass: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.66.0.
2022-11-24 12:32:07 +01:00
