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Author SHA1 Message Date
Ricardo Wurmus 6e54ce9ca9
gnu: pigx-chipseq: Update to 0.1.0. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0.
[source]: Remove patch.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2022-06-01 12:19:48 +02:00
Maxim Cournoyer f451a8e80c
gnu: openbox: Patch for Python 3. 
* gnu/packages/patches/openbox-python3.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/openbox.scm (openbox)[source]: Apply it.
[arguments]: New field.
[propagated-inputs]: Replace python2-pyxdg with python-pyxdg.
[native-inputs]: Replace python-2 with python-wrapper.
Add autoconf, automake, gettext-minimal and libtool.
 2022-05-31 14:54:13 -04:00
Maxim Cournoyer b0193c649f
gnu: Remove 4store. 
* gnu/packages/databases.scm (4store): Delete variable.
* gnu/packages/patches/4store-fix-buildsystem.patch: Delete file.
* gnu/packages/patches/4store-unset-preprocessor-directive.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
 2022-05-31 14:54:11 -04:00
Maxim Cournoyer 5e25a69e6e
gnu: mozjs: Cleanup to only keep the last version. 
* gnu/packages/gnuzilla.scm (mozjs): Preserve only the metadata and otherwise
update fields to use those of mozjs-78.
[arguments]: Use gexps.
[phases]: Delete trailing #t.
[native-inputs]: Use new style.
(mozjs-38, mozjs-52, mozjs-60, mozjs-78): Delete variables.
* gnu/packages/patches/mozjs17-aarch64-support.patch
* gnu/packages/patches/mozjs24-aarch64-support.patch
* gnu/packages/patches/mozjs38-pkg-config-version.patch
* gnu/packages/patches/mozjs38-shell-version.patch
* gnu/packages/patches/mozjs38-tracelogger.patch
* gnu/packages/patches/mozjs38-version-detection.patch
* gnu/packages/patches/mozjs60-riscv64-support.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): De-register them.
* gnu/packages/games.scm (0ad): Adjust accordingly.
* gnu/packages/gnome.scm (gjs): Likewise.
* gnu/packages/polkit.scm (polkit-mozjs): Likewise.
 2022-05-31 14:54:10 -04:00
Maxim Cournoyer 54ef40a1f7
gnu: mia: Update to 2.4.7. 
* gnu/packages/patches/mia-fix-boost-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image-processing.scm (mia): Update to 2.4.7.
[source]: Apply patch.
[configure-flags]: Use the more conventional OFF option value (instead of 0).
[inputs]: Use new style.  Replace python2-lxml by python-lxml.  Replace vtk by
vtk-7.
[native-inputs]: Use new style.  Replace python-2 with python-wrapper.
 2022-05-31 14:54:07 -04:00
Maxim Cournoyer 887dec8a51
gnu: itk-snap: Fix build. 
* gnu/packages/patches/itk-snap-alt-glibc-compat.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image-processing.scm (itk-snap): Apply it.
[phases]: Delete trailing #t.
[inputs]: Use new style.  Replace vtk-6 with vtk-7.
 2022-05-31 14:54:07 -04:00
Maxim Cournoyer 607e48ba3c
gnu: Add vtk-7. 
* gnu/packages/image-processing.scm: (vtk-7): New variable.
* gnu/packages/patches/vtk-7-gcc-10-compat.patch: New patch.
* gnu/packages/patches/vtk-7-hdf5-compat.patch: Likewise.
* gnu/packages/patches/vtk-7-python-compat.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
 2022-05-31 14:54:06 -04:00
Maxim Cournoyer aad73bb58e
gnu: Remove rapicorn. 
* gnu/packages/graphics.scm (rapicorn): Delete variable.
* gnu/packages/patches/rapicorn-isnan.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2022-05-31 14:54:05 -04:00
Maxim Cournoyer dc71b4f1c6
gnu: breezy: Update to 3.2.2. 
* gnu/packages/patches/breezy-fix-gio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/version-control.scm (breezy): Update to 3.2.2.
[source]{snippet}: Delete pre-generated cythonized C files.
{patches}: Apply patch.
[tests?]: Disable tests.
[phases]{patch-test-shebangs, check}: New phase and override.
[native-inputs]: Add nano, python-cython, python-docutils,
and python-testrepository.
[inputs]: Use new style.  Add python-launchpadlib and python-pygobject.
[description]: Adjust Bazaar URL.
 2022-05-31 14:54:02 -04:00
Maxim Cournoyer 88a77bdda1
gnu: Remove python2-pygobject. 
* gnu/packages/glib.scm (python2-pygobject, python2-pygobject-2): Delete
variables.
(python-pygobject)[properties]: Delete field.
* gnu/packages/patches/python2-pygobject-2-deprecation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/gnome.scm (libsecret): Remove commented Python 2 inputs.
 2022-05-31 14:53:46 -04:00
Maxim Cournoyer edac21bfc7
gnu: Remove wicd. 
The last release is from 2017, stuck on Python 2.

* gnu/packages/wicd.scm: Delete file.
* gnu/packages/patches/wicd-bitrate-none-fix.patch: Delete file.
* gnu/packages/patches/wicd-get-selected-profile-fix.patch: Likewise.
* gnu/packages/patches/wicd-urwid-1.3.patch: Likewise.
* gnu/packages/patches/wicd-wpa2-ttls.patch: Likewise.
* gnu/local.mk: De-register them.
* gnu/services/networking.scm: Remove wicd service...
* doc/guix.texi: ... and its documentation.
* gnu/system/linux-container.scm (containerized-operating-system)
<services-to-drop>: Remove wicd-service-type.
 2022-05-31 14:53:42 -04:00
Maxim Cournoyer 64c86457db
gnu: Remove python2-subprocess32. 
* gnu/packages/python-xyz.scm (python2-subprocess32): Delete variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2022-05-31 14:53:39 -04:00
Maxim Cournoyer cfc02804fc
gnu: gourmet: Update to 0.17.4-0-8af29c8 and enable tests. 
* gnu/packages/patches/gourmet-sqlalchemy-compat.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/nutrition.scm (gourmet): Update to 0.17.4-0-8af29c8.
[source]: Apply patch.
[python]: Delete argument.
[tests?]: Likewise.
[phases]{prepare-x}: New phase.
{check}: New phase override.
{install-dekstop-file-and-icons}: New phase.
[native-inputs]: Delete python2-distutils-extra, intltool and python2-pygtk.
Add python-dogtail, python-pytest, python-selenium and xorg-server-for-tests.
[inputs]: Delete python2-pygtk, python2-sqlalchemy, python2-lxml,
python2-pillow and python2-elib.intl.
Add gtk+, python-argcomplete, python-beautifulsoup4, python-gst,
python-keyring, python-lxml, python-pillow, python-pycairo, python-pyenchant,
python-pygobject, python-requests, python-scrape-schema-recipe,
python-sqlalchemy.
 2022-05-31 14:52:34 -04:00
Maxim Cournoyer 55fc0947d4
gnu: Remove python2-parameterized. 
* gnu/packages/check.scm (python2-parameterized): Delete variable.
* gnu/packages/patches/python2-parameterized-docstring-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2022-05-31 14:52:26 -04:00
Maxim Cournoyer d11d27e2e4
gnu: guile-ac-d-bus: Run test suite. 
* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[source]: Apply patch.
[phases]{check}: New phase.
[native-inputs]: Add bash-minimal.
 2022-05-31 11:20:28 -04:00
yarl baudig 6169c582d1
gnu: emacs-helpful: Update to 0.19 
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19.
[source]: Use the patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-31 06:16:18 +02:00
Greg Hogan 092ee35155
gnu: casync: Update to 99559cd1. 
* gnu/packages/sync.scm (casync): Update to 99559cd1.
[source]: Remove patch.
[arguments]: Fix installation.
[native-inputs]: Add python.
[inputs]: Add eudev.
* gnu/packages/patches/casync-renameat2-declaration.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Morgan Smith 3f31525546
gnu: GCC: Add cross environment variables patch to GCC 12. 
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add
gcc-12-cross-environment-variables.patch.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:39 +02:00
Efraim Flashner 4259a6516a
gnu: virtuoso-ose: Register patch. 
This is a follow-up to 48efbde7a9.

* gnu/local.mk (dist_patch_DATA): Register patch.
 2022-05-30 10:42:47 +03:00
Liliana Marie Prikler d37c7f7ad4
gnu: emacs-deferred: Fix wrong number of arguments. 
* gnu/packages/patches/emacs-deferred-fix-number-of-arguments.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-deferred)[patches]: Use it here.
* gnu/local.mk (dist_patch_DATA): Add it here.
 2022-05-27 01:49:52 +02:00
Josselin Poiret dab819d5c4
Move (gnu platform) and (gnu platforms ...) to guix/. 
* gnu/platform.scm:
* gnu/platforms/arm.scm:
* gnu/platforms/hurd.scm:
* gnu/platforms/mips.scm:
* gnu/platforms/powerpc.scm:
* gnu/platforms/riscv.scm:
* gnu/platforms/s390.scm:
* gnu/platforms/x86.scm: Move to guix/.

* Makefile.am:
* doc/guix.texi (Porting to a New Platform):
* etc/release-manifest.scm:
* gnu/ci.scm:
* gnu/image.scm:
* gnu/local.mk:
* gnu/packages/bioinformatics.scm:
* gnu/packages/bootstrap.scm:
* gnu/packages/cross-base.scm:
* gnu/packages/instrumentation.scm:
* gnu/packages/linux.scm:
* gnu/system/image.scm:
* gnu/system/images/hurd.scm:
* gnu/system/images/novena.scm:
* gnu/system/images/pine64.scm:
* gnu/system/images/pinebook-pro.scm:
* gnu/system/images/rock64.scm:
* guix/scripts/build.scm:
* guix/scripts/system.scm:
* guix/self.scm: Update (gnu platform...) to (guix platform...).

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-25 09:27:25 +02:00
Tobias Geerinckx-Rice 1290fce44d
gnu: ytnef: Update to 2.0. 
* gnu/packages/mail.scm (ytnef): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/ytnef-CVE-2021-3403.patch,
gnu/packages/patches/ytnef-CVE-2021-3404.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2022-05-22 02:00:08 +02:00
Ludovic Courtès cdb6b19b5f
gnu: gcc@12: Add missing file. 
Fixes <https://issues.guix.gnu.org/55616>.
Reported by Tim Rakowski <tim.rakowski@gmail.com>.

This is a followup to 37e29ccd33.

* gnu/packages/patches/gcc-12-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-05-24 21:53:02 +02:00
Timotej Lazar 3e59d41df0
gnu: sssd: Update to 2.7.0. 
Add support for renewing AD membership with adcli. Wrap binaries with
LDB_MODULES_PATH. Fix the sss_analyze utility to run without systemd
libraries. Add native inputs to generate man pages and run additional tests
during build.

* gnu/packages/sssd.scm (sssd): Update to 2.7.0.
[patches]: Drop patches applied upstream. Add a patch for sss_analyze.
[inputs]: Add adcli, bash-minimal, jose, keyutils, libnl, pcre2, python.
Drop augeas, pcre.
[native-inputs]: Add cmocka, doxygen, gettext-minimal, libfaketime,
libtool, openssh, po4a, softhsm.
[arguments]: Rewrite in gexp style. Fix configure checks. Remove static
library from install. Wrap binaries to set correct paths.
* gnu/packages/patches/sssd-collision-with-external-nss-symbol.patch,
gnu/packages/patches/sssd-fix-samba-4.15.3.patch,
gnu/packages/patches/sssd-fix-samba.patch: Delete files.
* gnu/packages/patches/sssd-optional-systemd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-24 17:19:02 +02:00
Mathieu Othacehe 31f7696be4
platform: Introduce new platforms. 
* gnu/platforms/intel.scm: New file.
* gnu/platforms/mips.scm: Ditto.
* gnu/platforms/powerpc.scm: Ditto.
* gnu/platforms/riscv.scm: Ditto.
* gnu/platforms/s390.scm: Ditto.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add them.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-22 15:15:32 +02:00
Philip McGrath aefcfdd0ae
guix: Add elm-build-system. 
* gnu/packages/patches/elm-offline-package-registry.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/elm.scm (elm): Use it.
* guix/build-system/elm.scm, guix/build/elm-build-system.scm,
tests/elm.scm: New files.
* Makefile.scm (MODULES, SCM_TESTS): Add them.
* doc/guix.texi (Build Systems): Document 'elm-build-system'.
* doc/contributing.texi (Elm Packages): New section. Document naming
conventions and utilities.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-22 01:07:51 +02:00
Philip McGrath 4e99510dea
gnu: elm-compiler: Update to 0.19.1. 
* gnu/packages/patches/elm-compiler-disable-reactor.patch,
gnu/packages/patches/elm-compiler-fix-map-key.patch: Delete files.
* gnu/packages/patches/elm-reactor-static-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/elm.scm (elm-compiler): Update to 0.19.1.
[origin]<patches>: Remove stale patches. Add new patch.
[arguments]: Use G-expressions. Add #:configure-flags for new patch.
[inputs]: Remove ghc-file-embed. Add ghc-filelock.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-22 01:07:51 +02:00
Zhu Zihao 31a9003d4f
gnu: Add libobjc2. 
* gnu/packages/patches/libobjc2-unbundle-robin-map.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add corresponding file entry.
* gnu/packages/gnustep.scm (libobjc2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-20 20:27:32 +02:00
Liliana Marie Prikler 77a41cb98c
gnu: emacs-ess: Fix build failure. 
* gnu/packages/patches/emacs-ess-fix-obsolete-function-alias.patch: New file.
* gnu/packages/statistics.scm (emacs-ess)[source]<patches>: Add it here...
* gnu/local.mk (dist_patch_DATA): ... and here.
 2022-05-19 20:31:32 +02:00
Kyle Meyer 5fc5cc2f73
gnu: emacs-lispy: Fix failing test under Emacs 28. 
* gnu/packages/patches/emacs-lispy-fix-thread-last-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-lispy): Use it here.
* gnu/local.mk (dist_patch_DATA): Register it here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-05-18 00:16:03 -04:00
Sughosha 5ba12f0176
gnu: gcolor3: Fix build with libportal-0.5. 
* gnu/packages/patches/gcolor3-update-libportal-usage.patch: New file.
* gnu/packages/gnome.scm (gcolor3)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-16 15:48:09 +02:00
Liliana Marie Prikler 22d6e36005
gnu: emacs-yasnippet: Fix build. 
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Use it here.
* gnu/local.mk (dist_patch_DATA): Register it here.
 2022-05-15 03:07:50 +02:00
Vagrant Cascadian de68877a51
gnu: libxmlb: Install xb-tool in bin dir. 
* gnu/packages/patches/libxmlb-install-xb-tool-into-bindir.patch: New file.
* gnu/packages/xml.scm (libxmlb)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/diffoscope.scm (diffoscope)[arguments]: Add
  'xb-tool-external-tool phase.
 2022-05-14 17:16:32 -07:00
Liliana Marie Prikler b65a1e4a21
gnu: emacs: Update to 28.1. 
* gnu/packages/emacs.scm (emacs): Update to 28.1
* gnu/packages/patches/emacs-exec-path.patch: Adjust accordingly.
* gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: Delete file.
* gnu/local.mk: Remove it here.
 2022-05-14 16:13:30 +02:00
Maxim Cournoyer 2576d9ffc4
gnu: python-ipython-documentation: Also build info and pdf targets. 
* gnu/packages/patches/python-ipython-documentation-chars.patch: New file.
* gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise.
* gnu/local.mk: Register them.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
[source]: Apply patches.
[arguments]: Use gexps.
[phases]{sanitize-sources}: New phase.
{configure-sphinx-for-xelatex}: Likewise.
{install}: Streamline.  Also build and install the PDF and info manual.
Enable parallel processing.
[inputs]: Delete field.
[propagated-inputs]: Remove texlive-updmap.cfg input.  Add fontconfig,
font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia,
texlive-bin and texlive-xindy.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer 08199a93c8
gnu: Add python-debugpy. 
* gnu/packages/python-xyz.scm (python-debugpy): New variable.
* gnu/packages/patches/python-debugpy-unbundle-pydevd.patch: New file.
* gnu/local.mk: Register it.
 2022-05-12 12:45:41 -04:00
Maxim Cournoyer c29f9f72cd
gnu: python-mypy: Update to 0.942 and fix search path. 
* gnu/packages/patches/python-mypy-use-sys-path.patch: New patch.
* gnu/local.mk: Register it.
* gnu/packages/python-check.scm (python-mypy): Update to 0.942.
[source]: Apply patch.
 2022-05-12 12:45:30 -04:00
Philip McGrath af375c6394
gnu: racket: Update to 8.5. 
* gnu/packages/patches/racket-gui-tethered-launcher-backport.patch,
gnu/packages/patches/racket-enable-scheme-backport.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/chez.scm (chez-scheme-for-racket): Update to 9.5.7.6.
* gnu/packages/racket.scm (%racket-version): Update to 8.5.
(%racket-origin)[patches]: Remove obsolete patches.
(racket-vm-common-configure-flags): Correct comment.
(racket)[inputs]<2d, datalog, deinprogramm, draw, drracket, expeditor,
htdp, pict, plot, quickscript, racklog, rackunit, redex, scribble,
typed-racket, string-constants, syntax-color, web-server, xrepl>: Update
checksums.
<gui, srfi>: Likewise, and remove obsolete backports.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-12 10:30:07 +02:00
Tobias Geerinckx-Rice 388e039044
gnu: isc-dhcp: Update to 4.4.3. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.3.
[source]: Remove upstreamed patch.
* gnu/packages/patches/isc-dhcp-gcc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-05-08 02:00:00 +02:00
Denis 'GNUtoo' Carikli 4d1a88312c
gnu: valgrind: Allow ld.so symbols to be found. 
Fixes <https://issues.guix.gnu.org/54728>.

* gnu/packages/valgrind.scm (valgrind/interactive)[native-inputs]:
Add libc:debug
[arguments]: Add patch-default-debuginfo-path phase
[source]: Add patch.
(valgrind-3.18)[source]: Inherit from (package-source valgrind/interactive)
and remove 'patches' field.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-09 12:26:45 +02:00
Niklas Eklund 51bbcc91b4
gnu: emacs-git-email: Fixes build of package. 
* gnu/packages/patches/emacs-git-email-missing-parens.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-git-email)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-09 00:07:31 +02:00
Tobias Geerinckx-Rice be6d5783ba
gnu: tor: Update to 0.4.7.7. 
* gnu/packages/tor.scm (tor): Update to 0.4.7.7.
[source]: Remove patch.
* gnu/packages/patches/tor-sandbox-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-05-01 02:00:18 +02:00
Jan (janneke) Nieuwenhuizen 53628d6e3b
gnu: Add dezyne. 
* gnu/packages/dezyne.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2022-05-06 14:39:50 +02:00
kiasoc5 253fc14777
gnu: nftables: Update to 1.0.2. 
* gnu/packages/patches/nftables-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (nftables): Update to 1.0.2.
[source]: Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-06 10:32:06 +02:00
Michael Rohleder 7727757a73
gnu: ytfzf: Update to 2.3. 
* gnu/packages/patches/ytfzf-programs.patch,
* gnu/packages/patches/ytfzf-updates.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/image-viewers.scm (ytfzf): Update to 2.3.
[source]: Delete patches.
[arguments]: Remove phase 'patch-script. Add phase 'install-addons,
'wrap-program.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-06 10:32:06 +02:00
Paul A. Patience 8b2d266607
gnu: dealii: Update to 9.3.3. 
* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Alexey Abramov 4d3c142e0b
gnu: openssh: Trust Guix store directory 
* gnu/local.mk (dist_patch_DATA): Add the patch
* gnu/packages/patches/openssh-trust-guix-store-directory.patch: Patch it
* gnu/packages/ssh.scm (openssh[source]): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 00:33:53 +02:00
Zhu Zihao f785299af1
gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the sandbox. 
Fixes <https://issues.guix.gnu.org/54784>.

* gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add corresponding entry.
* gnu/packages/package-management.scm (flatpak)[source]: Use patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-28 16:49:08 +02:00
pukkamustard ed2e797750
gnu: Add pikchr. 
* gnu/packages/pikchr.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
Eric Bavier 0cf1178a65
gnu: idris: Update to 1.3.4. 
* gnu/packages/patches/idris-build-with-haskeline-0.8.patch,
gnu/packages/patches/idris-build-with-megaparsec-9.patch,
gnu/packages/patches/idris-disable-test.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/idris.scm (idris): Update to 1.3.4.
[source]: Use git-fetch.  Adjust patches.

Co-authored-by: Attila Lendvai <attila@lendvai.name>
 2022-04-20 08:35:48 -05:00