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106088 commits

Author SHA1 Message Date
Ricardo Wurmus 62ddd3bc80
gnu: Add python-fanc.
* gnu/packages/bioinformatics.scm (python-fanc): New variable.

Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02 17:43:20 +01:00
Ricardo Wurmus ee069ec651
gnu: Add python-genomic-regions.
* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable.

Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02 17:20:54 +01:00
Navid Afkhami 9ddc4e5b03
gnu: python-msgpack-numpy: Update to 0.4.8.
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-12-02 15:04:15 +01:00
Ricardo Wurmus 0c2dad9951
gnu: Add python-pybloom-live.
* gnu/packages/python-xyz.scm (python-pybloom-live): New variable.
2022-12-02 15:03:00 +01:00
Ricardo Wurmus 840d543939
gnu: python-xxhash: Update to 3.1.0.
* gnu/packages/digest.scm (python-xxhash): Update to 3.1.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools-scm.
2022-12-02 15:03:00 +01:00
Maxim Cournoyer 4781f0458d
Revert "gnu: linux-libre: Move info manual to doc output."
This reverts commit 748ec62882.  It broke the
linux-libre-module-builder like so:

   builder for
   `/gnu/store/293jxydym9z7ck7afmrjqhiw3xpfs4i1-linux-libre-module-builder-6.0.10.drv'
   failed to produce output path
   `/gnu/store/ghmp1q5w6r1s9364rz53jd42152wgz2v-linux-libre-module-builder-6.0.10-doc'

for reasons difficult to understand.
2022-12-01 21:37:12 -05:00
Marius Bakke 2775bb95c7
gnu: ungoogled-chromium: Update to 108.0.5359.71-1.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M108.
(%chromium-version): Set to 108.0.5359.71-1.
(%arch-revision): Bump to newer commit.
(%ungoogled-origin): Update hash.
(%gcc-patches): Remove.
(%reverse-patches): Remove one patch.
(%arch-patches): New variable.
(%patches): New variable.
(ungoogled-chromium-snippet): Apply %PATCHES instead of individual variables.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Adjust configure flag.
[inputs]: Change from HARFBUZZ-3 to HARFBUZZ-5.
2022-12-02 00:21:25 +01:00
Marius Bakke 503fb0dcb4
gnu: ungoogled-chromium: Generalize OpenJPEG substitution.
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't hard code
openjpeg version.
2022-12-02 00:21:25 +01:00
Marius Bakke 1a8d063a44
gnu: harfbuzz: Add 5.3.1.
* gnu/packages/gtk.scm (harfbuzz-5): New variable.
2022-12-02 00:21:25 +01:00
Marius Bakke c091339204
gnu: balsa: Update to 2.6.4.
* gnu/packages/mail.scm (balsa): Update to 2.6.4.
2022-12-02 00:21:25 +01:00
Marius Bakke dee7c94b59
gnu: balsa: Add release-monitoring-url.
* gnu/packages/mail.scm (balsa)[properties]: New field.
2022-12-02 00:21:25 +01:00
Marius Bakke 168afe2976
gnu: svt-av1: Update to 1.3.0.
* gnu/packages/video.scm (svt-av1): Update to 1.3.0.
[supported-systems]: Remove.
[description]: Update.
2022-12-02 00:21:25 +01:00
Marius Bakke 84c577d7a7
gnu: QtWebEngine: Simplify code to remove third-party files.
* gnu/packages/qt.scm (remove-third-party-files): Simplify some procedures.
2022-12-02 00:21:25 +01:00
Marius Bakke 9252f14722
gnu: qtwebengine@6: Fix third-party code removal snippet.
* gnu/packages/qt.scm (qtwebengine-5)[source](snippet): Move code to delete
third-party files out to ...
(remove-third-party-files): ... this new variable.
(qtwebengine)[source](snippet): Use that variable instead of the broken
duplicate implementation.  Adjust PRESERVED-THIRD-PARTY-FILES accordingly.
[native-inputs]: Add PYTHON-BEAUTIFULSOUP4.
2022-12-02 00:21:25 +01:00
Marius Bakke 6f0a8371fe
gnu: gn: Use G-expression.
* gnu/packages/build-tools.scm (gn)[arguments]: Convert to G-expression.
2022-12-02 00:21:24 +01:00
Marius Bakke e069db7e30
gnu: gn: Remove input labels.
* gnu/packages/build-tools.scm (gn)[native-inputs]: Remove labels.
2022-12-02 00:21:24 +01:00
Marius Bakke c02a77bdd6
gnu: gn: Update to 0.0-2072.1c4151f.
* gnu/packages/build-tools.scm (gn): Update to 0.0-2072.1c4151f.
[arguments]: Adjust create-last-commit-position phase to be identical with
upstream code.
2022-12-02 00:21:24 +01:00
Marius Bakke 34a70b1f86
gnu: balsa: Fix build.
* gnu/packages/mail.scm (balsa)[arguments]: Add #:phase to build with newer
WebKitGTK.
[inputs]: Change from GTKSOURCEVIEW to GTKSOURCEVIEW-4.
2022-12-02 00:21:24 +01:00
Ludovic Courtès 00ddf185e6
services: networking: Avoid 'match' on records.
* gnu/services/networking.scm (dhcp-client-shepherd-service): Use
accessors instead of 'match'.
(inetd-shepherd-service): Likewise.
(tor-shepherd-service): Likewise.
(network-manager-service-type): Likewise.
(modem-manager-service-type): Likewise.
(wpa-supplicant-service-type): Likewise.
(openvswitch-activation): Likewise.
(openvswitch-shepherd-service): Likewise.
(dhcpd-shepherd-service): Use 'match-record' instead of 'match'.
(dhcpd-activation): Likewise.
(ntp-server->string): Likewise.
(ntp-shepherd-service): Likewise.
(tor-configuration->torrc): Likewise.
(network-manager-activation): Likewise.
(network-manager-environment): Likewise.
(network-manager-shepherd-service): Likewise.
(usb-modeswitch-configuration->udev-rules): Likewise.
(wpa-supplicant-shepherd-service): Likewise.
(iptables-shepherd-service): Likewise.
(nftables-shepherd-service): Likewise.
(keepalived-shepherd-service): Likewise.
2022-12-02 00:03:40 +01:00
Ludovic Courtès adfe1064c8
services: base: Use 'match-record' instead of 'match'.
* gnu/services/base.scm (agetty-shepherd-service)
(mingetty-shepherd-service)
(nscd.conf-file)
(udev-shepherd-service)
(udev-etc)
(gpm-shepherd-service)
(network-set-up/linux)
(network-tear-down/linux)
(static-networking-shepherd-service)
(greetd-agreety-tty-session-command)
(greetd-agreety-tty-xdg-session-command): Use 'match-record' instead of
'match'.
(guix-accounts): Use <guix-configuration> accessors.
(udev-service-type): Use <udev-configuration> accessors.
2022-12-02 00:02:13 +01:00
Ludovic Courtès 4c8eea027a
home: services: Use 'match-record' instead of 'match'.
* gnu/home/services/mcron.scm (home-mcron-shepherd-services): Use
'match-record' instead of 'match'.
* gnu/home/services/shells.scm (home-bash-extensions): Likewise.
* gnu/home/services/xdg.scm (serialize-xdg-desktop-entry): Likewise.
2022-12-02 00:02:13 +01:00
Ludovic Courtès cc9ee514e3
doc: Recommend 'match-record'.
* doc/contributing.texi (Data Types and Pattern Matching): Recommend
'match-record'.
2022-12-02 00:02:12 +01:00
Ludovic Courtès 7c1161dba4
records: 'match-record' checks fields at macro-expansion time.
This allows 'match-record' to be more efficient (field offsets are
computed at compilation time) and to report unknown fields at
macro-expansion time.

* guix/records.scm (map-fields): New macro.
(define-record-type*)[rtd-identifier]: New procedure.
Define TYPE as a macro and use a separate identifier for the RTD.
(lookup-field, match-record-inner): New macros.
(match-record): Rewrite in terms of 'match-error-inner'.
* tests/records.scm ("match-record, simple")
("match-record, unknown field"): New tests.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Rename 'log-file'
local variable to 'main-log-file'.
* gnu/services/getmail.scm (serialize-getmail-configuration-file): Move
after <getmail-configuration-file> definition.
2022-12-02 00:02:12 +01:00
Sharlatan Hellseher 594f5ef351
gnu: Add alfa.
* gnu/packages/astronomy.scm (alfa): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-02 00:02:12 +01:00
Philip McGrath 5a7e496c5d
etc: teams: Add chez.scm to Racket team's scope.
Racket's variant of Chez Scheme is defined in that file.

* etc/teams.scm.in (racket)[#:scope]: Add gnu/packages/chez.scm.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-02 00:02:12 +01:00
Ludovic Courtès 8e416c979d
gnu: guile-gcrypt: Update to 0.4.0.
* gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.4.0.
2022-12-02 00:02:12 +01:00
Stefan c7793b82ef
gnu: raspberry-pi: Add a bootloader-chain for the Raspberry Pi and os examples.
* gnu/packages/raspberry-pi.scm (grub-efi-bootloader-chain-raspi-64): New
bootloader variable, capable to boot a Raspberry Pi over network or from a
local storage.
* gnu/system/examples/raspberry-pi-64.tmpl: New operating-system example.
* gnu/system/examples/raspberry-pi-64-nfs-root.tmpl: New operating-system
example for booting over network.
* Makefile.am (EXAMPLES): Register the new files.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:29 -05:00
Stefan 0ea8328052
gnu: raspberry-pi: New make-raspi-bcm28-dtbs procedure.
* gnu/packages/raspberry-pi.scm (make-raspi-bcm28-dtbs): New procedure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:29 -05:00
Stefan 4e2e4b222f
gnu: raspberry-pi: Add helpers for config.txt file generation.
* gnu/packages/raspberry-pi.scm (raspi-config-file, raspi-custom-txt):
New functions.
(%raspi-config-txt, %raspi-bcm27-dtb-txt, %raspi-bcm28-dtb-txt
%raspi-u-boot-bootloader-txt): New variables.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:29 -05:00
Stefan 13f9110e5f
gnu: raspberry-pi: Add defconfig objects to build customized Linux kernels.
gnu/packages/raspberry-pi.scm (make-raspi-defconfig): New procedure.
(%bcm2709-defconfig, %bcm2711-defconfig, %bcm2711-defconfig-64)
(%bcmrpi3-defconfig): New variables.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:28 -05:00
Stefan 16ecfda418
gnu: linux: Add a 'customize-linux' procedure.
* gnu/packages/linux.scm (linux-srcarch): New procedure.
(customize-linux): Likewise.
(make-defconfig): New procedure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:28 -05:00
Stefan c2c1dfdf57
gnu: bootloader: Add U-Boot packages for Raspberry Pi models.
* gnu/packages/bootloader.scm (make-u-boot-package): Add keyword
parameters 'name-suffix' and 'append-description'.
(make-u-boot-bin-package): New procedure
(%u-boot-rpi-efi-configs): New variable.
(%u-boot-rpi-description-32-bit, %u-boot-rpi-description-64-bit,
%u-boot-rpi-efi-description, %u-boot-rpi-efi-description-32-bit):
New variables.
(u-boot-rpi-2-efi, u-boot-rpi-2-bin, u-boot-rpi-2-efi-bin})
(u-boot-rpi-3-32b-efi, u-boot-rpi-3-32b-bin, u-boot-rpi-3-32b-efi-bin)
(u-boot-rpi-4-32b-efi, u-boot-rpi-4-32b-bin, u-boot-rpi-4-32b-efi-bin)
(u-boot-rpi-arm64-efi, u-boot-rpi-arm64-bin)
u-boot-rpi-arm64-efi-bin): New packages.
(u-boot-tools): Reuse the description of u-boot.
(u-boot-am335x-boneblack, u-boot-am335x-evm)
(u-boot-nintendo-nes-classic-edition, u-boot-novena): Make use of new keyword
parameters of make-u-boot-package.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:28 -05:00
Stefan a9acbf919a
gnu: bootloader: Rework chaining, add grub-efi-netboot-removable-bootloader.
This rework allows to use an (efi-bootloader-chain) like this, which is able
to boot over network or local storage, depending on whether the bootloader
target has support for symbolic links:

   (operating-system
    (bootloader
      (bootloader-configuration
        (bootloader
          (efi-bootloader-chain
            grub-efi-netboot-removable-bootloader
            #:packages (list my-firmware-package
                             my-u-boot-package)
            #:files (list (plain-file "config.txt"
                                      "kernel=u-boot.bin"))
            #:hooks my-special-bootloader-profile-manipulator))
        (targets '("/booti/efi"))
        …))
    …)

* doc/guix.texi (Bootloader Configuration): Describe the new
‘grub-efi-netboot-removable-bootloader’.  Mention the file names used and that
the UEFI Boot Manager is not modified.  Advise to disable write-access over
TFTP.
* gnu/bootloader.scm (efi-bootloader-profile): Allow a list of packages and
collect everything directly in the profile, avoiding a separate collection
directory.  Renamed the profile from "bootloader-profile" to
"efi-bootloader-profile".
[bootloader-collection]: Rename to...
[efi-bootloader-profile-hook]: ... this and remove unused modules.  Do not
create the now extraneous collection directory.
(efi-bootloader-chain): Add PACKAGES and DISK-IMAGE-INSTALLER arguments.
Remove handling of the collection directory, now only calling the given
installer procedure.
* gnu/bootloader/grub.scm (make-grub-efi-netboot-installer): New helper.
(make-grub-configuration): New helper based on (grub-configuration-file).  Add
a GRUB argument, fix indentation, remove previous code retrieving GRUB from
CONFIG.
(grub-configuration-file): Make use of make-grub-configuration.
(grub-efi-configuration-file): New procedure.
(grub-cfg): New variable to replace "/boot/grub/grub.cfg".
(install-grub-efi-netboot): Remove, splitting logic to...
(make-grub-efi-netboot-installer): ... this new helper procedure, as well as
to make-grub-efi-netboot, added below.
(grub-bootloader): Adjust to use the GRUB-CFG.
(grub-efi-bootloader): Likewise.  Removed inheritance and declare all fields
explicitly.
(make-grub-efi-netboot-bootloader): New procedure.
(grub-efi-netboot-bootloader): Use it.
(grub-efi-netboot-removable-bootloader): New variable.
* gnu/packages/bootloaders.scm (make-grub-efi-netboot): New procedure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 14:31:28 -05:00
Ricardo Wurmus 1a63aea943
linux-container: Do not replace nscd-service-type.
* gnu/system/linux-container.scm (containerized-operating-system): Respect
customizations to the nscd-service-type and only modify the caches field.
2022-12-01 19:52:13 +01:00
Maxim Cournoyer df25165530
gnu: u-boot-pinebook-pro-rk3399: Fix indentation.
* gnu/packages/bootloaders.scm (u-boot-pinebook-pro-rk3399): Fix indentation.
2022-12-01 11:57:10 -05:00
Maxim Cournoyer 24b0fe3463
gnu: u-boot-rockpro64-rk3399: Fix indentation.
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399): Fix indentation.
2022-12-01 11:57:10 -05:00
Maxim Cournoyer a18aaa26dc
gnu: u-boot-firefly-rk3399: Fix indentation.
* gnu/packages/bootloaders.scm (u-boot-firefly-rk3399): Fix indentation.
2022-12-01 11:57:10 -05:00
Maxim Cournoyer d1ef19e76e
gnu: u-boot-puma-rk3399: Fix indentation.
* gnu/packages/bootloaders.scm (u-boot-puma-rk3399): Fix indentation.
2022-12-01 11:57:10 -05:00
Maxim Cournoyer 8cac149ec5
gnu: u-boot-nintendo-nes-classic-edition: Fix indentation.
* gnu/packages/bootloaders.scm
(u-boot-nintendo-nes-classic-edition): Fix indentation.
2022-12-01 11:57:09 -05:00
Maxim Cournoyer e99dc7353f
gnu: make-u-boot-package: Fix indentation.
* gnu/packages/bootloaders.scm (make-u-boot-package): Fix indentation.
2022-12-01 11:57:09 -05:00
Maxim Cournoyer 8d1d209ffe
gnu: u-boot-tools: Fix indentation.
* gnu/packages/bootloaders.scm (u-boot-tools): Fix indentation.
2022-12-01 11:57:09 -05:00
Maxim Cournoyer 650636baca
gnu: dtc: Fix indentation.
* gnu/packages/bootloaders.scm (dtc): Fix indentation.
2022-12-01 11:57:09 -05:00
Maxim Cournoyer 76259d7305
gnu: grub-efi32: Fix indentation.
* gnu/packages/bootloaders.scm (grub-efi32): Fix indentation.
2022-12-01 11:57:09 -05:00
Maxim Cournoyer 1a1a5aad2c
gnu: grub: Normalize indentation.
* gnu/packages/bootloaders.scm (grub): Re-indent package and remove trailing #t.
2022-12-01 11:57:08 -05:00
Stefan a3f638e748
build: kconfig: Add new module to modify defconfig files.
* guix/build/kconfig.scm: New file.
* Makefile.am: Register it.
* gnu/packages/bootloaders.scm (make-u-boot-package)
(make-u-boot-sunxi64-package): Add DEFCONFIGS and CONFIGS arguments.  Remove
dead code.
(u-boot-am335x-boneblack, u-boot-pinebook)
(u-boot-novena,u-boot-rockpro64-rk3399): Simplify packages by using the new
keyword arguments.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 11:57:06 -05:00
Maxim Cournoyer 748ec62882
gnu: linux-libre: Move info manual to doc output.
The kernel Linux is installed in the system profile, which means the manual
was not easily discoverable.  Move it to the "doc" output, so that users can
install the Linux documentation explicitly in their user profile without
pulling the whole Linux package.

* gnu/packages/linux.scm (make-linux-libre*) [outputs]: Conditionally add a
"doc" output.
[phases] {install-doc}: Install the info manual to the doc output, an create a
"linux" symlink to it for convenience.
* guix/build-system/linux-module.scm (make-linux-module-builder): Delete the
"doc" output, if present.
2022-12-01 10:53:49 -05:00
Stefan ad9d0f8e58
gnu: linux: Fix the extra-version parameter in make-linux-libre*.
* gnu/packages/linux.scm (make-linux-libre*)

[phases] {configure}: Remove now extraneous INPUTS argument and Move code
setting environment variables to...
{set-environment}: ... this new phase.  Patch the Makefile to accept
EXTRAVERSION from the environment.  Fix the usage of an empty extra-version
string.
{install}: Remove extraneous NATIVE-INPUTS argument.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-12-01 10:53:48 -05:00
Andrew Tropin 0823fd1aa9
services: network-manager: Add iwd backend support.
* gnu/services/networking.scm (network-manager-configuration)[iwd?]: New
field.
(network-manager-shepherd-service): Add iwd to requirements if needed.
* doc/guix.texi: Add information about iwd? option.
2022-12-01 18:56:24 +04:00
Andrew Tropin 7dddf0cc54
home: xdg: Export xdg-base/user-directories getters.
* gnu/home/services/xdg.scm: Export xdg-base/user-directories getters.
2022-12-01 18:56:23 +04:00
Ricardo Wurmus 4df7a71b25
gnu: sssd: Update to 2.8.1.
* gnu/packages/sssd.scm (sssd): Update to 2.8.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/sssd-optional-systemd.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2022-12-01 14:27:13 +01:00