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Author SHA1 Message Date
Mădălin Ionel Patrașcu 599655dc49
gnu: Add r-attract. 
* gnu/packages/bioconductor.scm (r-attract): New variable.
 2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 3f755098cb
gnu: Add r-awfisher. 
* gnu/packages/bioconductor.scm (r-awfisher): New variable.
 2022-10-27 16:40:18 +02:00
Mădălin Ionel Patrașcu 930b1e0458
gnu: Add r-awst. 
* gnu/packages/bioconductor.scm (r-awst): New variable.
 2022-10-27 16:40:18 +02:00
Marius Bakke d9686315bd
gnu: ungoogled-chromium: Update to 107.0.5304.68-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M107.
(%chromium-version): Set to 107.0.5304.68.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch): Remove.
(%gcc-patches): Empty list.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Add clang_base_path and use_system_libwayland_server to
 #:configure-flags.  Adjust substitutions.
[inputs]: Add QTBASE-5.
 2022-10-27 16:15:09 +02:00
Mădălin Ionel Patrașcu 38cc09493c
gnu: Add r-barcodetrackr. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
 2022-10-27 15:58:45 +02:00
Mădălin Ionel Patrașcu 01944e0eb8
gnu: Add r-banocc. 
* gnu/packages/bioconductor.scm (r-banocc): New variable.
 2022-10-27 15:57:30 +02:00
Mădălin Ionel Patrașcu fe2be9c0cf
gnu: Add r-bandits. 
* gnu/packages/bioconductor.scm (r-bandits): New variable.
 2022-10-27 15:56:40 +02:00
Mădălin Ionel Patrașcu 9b337c2735
gnu: Add r-bambu. 
* gnu/packages/bioconductor.scm (r-bambu): New variable.
 2022-10-27 15:51:55 +02:00
Mădălin Ionel Patrașcu f0d0b6a0c5
gnu: Add r-badregionfinder. 
* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
 2022-10-27 15:50:33 +02:00
Mădălin Ionel Patrașcu c969517cec
gnu: Add r-bader. 
* gnu/packages/bioconductor.scm (r-bader): New variable.
 2022-10-27 15:35:22 +02:00
Mădălin Ionel Patrașcu 0ad89a84c3
gnu: Add r-bac. 
* gnu/packages/bioconductor.scm (r-bac): New variable.
 2022-10-27 15:34:01 +02:00
Mădălin Ionel Patrașcu f31b494bb6
gnu: Add r-basespacer. 
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
 2022-10-27 15:30:25 +02:00
Mădălin Ionel Patrașcu 3417a28080
gnu: Add r-eulerr. 
* gnu/packages/cran.scm (r-eulerr): New variable.
 2022-10-27 15:28:22 +02:00
Mădălin Ionel Patrașcu 9f8ab16fb5
gnu: Add r-tximportdata. 
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
 2022-10-27 15:24:06 +02:00
Mădălin Ionel Patrașcu f180a5990b
gnu: Add r-fishpond. 
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
 2022-10-27 15:19:36 +02:00
Mădălin Ionel Patrașcu fe7b421d05
gnu: Add python-multivelo. 
* gnu/packages/bioinformatics.scm (python-multivelo): New variable.
 2022-10-27 15:15:19 +02:00
Hong.Li@mdc-berlin.de 358a1fdf7b
gnu: Add r-seuratwrappers. 
* gnu/packages/bioinformatics.scm (r-seuratwrappers): New variable.
 2022-10-27 15:03:21 +02:00
Ricardo Wurmus 87763421a9
gnu: r-seurat: Update to 4.2.0. 
* gnu/packages/cran.scm (r-seurat): Update to 4.2.0.
 2022-10-27 15:03:21 +02:00
Ricardo Wurmus 1cc12eace3
gnu: r-seuratobject: Update to 4.1.2. 
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.2.
 2022-10-27 15:03:21 +02:00
Mădălin Ionel Patrașcu 4b9fa56cad
gnu: Add r-baalchip. 
* gnu/packages/bioconductor.scm (r-baalchip): New variable.
 2022-10-27 13:54:18 +02:00
Mădălin Ionel Patrașcu 8e6a9b23d0
gnu: Add python-jupytext. 
* gnu/packages/python-xyz.scm (python-jupytext): New variable.
 2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu c28598db5b
gnu: Add python-mdit-py-plugins. 
* gnu/packages/python-xyz.scm (python-mdit-py-plugins): New variable.
 2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu 447400c853
gnu: Add python-markdown-it-py. 
* gnu/packages/python-xyz.scm (python-markdown-it-py): New variable.
 2022-10-27 13:25:15 +02:00
Mădălin Ionel Patrașcu d748d4fd6c
gnu: Add python-mdurl. 
* gnu/packages/python-xyz.scm (python-mdurl): New variable.
 2022-10-27 13:25:15 +02:00
Ricardo Wurmus be51ee7ced
gnu: Add ghc-6.0. 
* gnu/packages/haskell.scm (ghc-6.0): New variable.
 2022-10-27 13:25:15 +02:00
Ricardo Wurmus 82791af033
gnu: ghc-4: Build full compiler using provided *.hc files. 
* gnu/packages/haskell.scm (ghc-4)[source]: Remove patch.
[arguments]: Change to build full compiler.
[native-inputs]: Remove default binutils and gcc; add tarball for hc files.
* gnu/packages/patches/ghc-4.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-10-27 13:25:15 +02:00
Efraim Flashner bbaf3bcb45
gnu: python-afdko: Skip a test. 
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Adjust custom
'check phase to skip a test.
 2022-10-27 14:13:52 +03:00
Andrew Tropin 95d44c0586
gnu: Add emacs-clj-refactor. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): New variable.
 2022-10-27 09:27:40 +04:00
Andrew Tropin 39dfa2947f
gnu: Add emacs-inflections. 
* gnu/packages/emacs-xyz.scm (emacs-inflections): New variable.
 2022-10-27 09:18:53 +04:00
Tobias Geerinckx-Rice 5dda4c69f0
gnu: xorriso: Update to 1.5.4. 
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.4.
 2022-10-23 02:00:07 +02:00
Tobias Geerinckx-Rice df5cbe529b
gnu: sudo: Update to 1.9.12. 
* gnu/packages/admin.scm (sudo): Update to 1.9.12.
 2022-10-23 02:00:07 +02:00
Tobias Geerinckx-Rice 188acd0aac
gnu: mpv: Prepare for cross-compilation. 
* gnu/packages/video.scm (mpv)[arguments]: Use CC-FOR-TARGET.
 2022-10-23 02:00:07 +02:00
Tobias Geerinckx-Rice 9eea2db6ae
gnu: mpv: Use G-expressions. 
* gnu/packages/video.scm (mpv)[arguments]:
Rewrite as G-expressions.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 51aac125f0
gnu: mpv: Remove input labels. 
* gnu/packages/video.scm (mpv)[inputs]: Remove input labels.
[arguments]: Use SEARCH-INPUT-FILE instead.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 32be0431ff
gnu: mpv: Remove trailing #t from phases. 
* gnu/packages/video.scm (mpv)[arguments]: Don't explicitly return #t
from phases.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 19f3dbcb4d
system: Support bare-bones serial console. 
* gnu/system/examples/bare-bones.tmpl (operating-system):
Add a ttyS0 console to kernel-arguments.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 68f4b7a158
gnu: memtest86+: Include a GRUB-based ISO image. 
* gnu/packages/hardware.scm (memtest86+)[arguments]: Add a new 'patch-broken-Makefiles and custom 'build phase.
Add "grub-memtest.iso" to the list of files to 'install.
[native-inputs]: Add dosfstools, grub-hybrid, mtools, and xorriso.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 634f7cd7df
gnu: memtest86+: Use G-expressions. 
* gnu/packages/hardware.scm (memtest86+)[arguments]:
Rewrite as G-expressions.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice e940828ccf
gnu: memtest86+: Update to 6.00. 
* gnu/packages/hardware.scm (memtest86+): Update to 6.00.
[source]: Use GIT-FETCH & GIT-FILE-NAME.
[arguments]: Stop forcing #:system i686-linux.  Instead, honour the
target word size in a new 'enter-build-directory phase.
Remove custom 'build phase: ‘memtest’ was replaced by ‘memtest.efi’.
Adjust the 'install phase accordingly, and install only ‘README.md’.
[native-inputs]: Remove gcc-4.9.
[description]: Remove obsolete BIOS limitation.
 2022-10-23 02:00:06 +02:00
Tobias Geerinckx-Rice 75bf5dac2e
gnu: mu: Update to 1.8.11. 
* gnu/packages/mail.scm (mu): Update to 1.8.11.
 2022-10-23 02:00:05 +02:00
Felix Gruber c07b55eb94
gnu: oil: Update to 0.12.7. 
* gnu/packages/shells.scm (oil): Update to 0.12.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-26 18:09:10 +03:00
Michael Rohleder 7ffb31d270
gnu: git-remote-gcrypt: Update to 1.5. 
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-26 18:09:09 +03:00
Michael Rohleder abec1f8b29
gnu: git-crypt: Update to 0.7.0. 
* gnu/packages/version-control.scm (git-crypt): Update to 0.7.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-26 18:09:09 +03:00
ギャラ 594a243f1d
gnu: qpwgragh: Update to 0.3.7. 
* gnu/packages/audio.scm (qpwgragh): Update to 0.3.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-26 18:09:05 +03:00
Liliana Marie Prikler 748684237c
gnu: komikku: Update to 1.2.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.2.0.
[inputs]: Add ‘python-rarfile’.
 2022-10-26 14:18:38 +02:00
cage ec74eef890
gnu: tinmop: Update to 0.9.9. 
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.9.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-10-26 11:12:46 +02:00
Efraim Flashner d816693a23
gnu: five-or-more: Fix build. 
* gnu/packages/gnome.scm (five-or-more)[inputs]: Replace
libgnome-games-support with libgnome-games-support-1.
 2022-10-26 11:35:15 +03:00
Efraim Flashner cbc1f75418
gnu: xpad: Fix build. 
* gnu/packages/gnome.scm (xpad)[inputs]: Add gtk+. Replace gtksourceview
with gtksourceview-4.
 2022-10-26 11:33:32 +03:00
Efraim Flashner d409a83e7c
gnu: rust-git2: Adjust inputs. 
* gnu/packages/crates-io.scm (rust-git2-0.15)[inputs]: Replace
libgit2-1.3 with libgit2.
(rust-git2-0.13)[inputs]: Continue with libgit2-1.3.
 2022-10-26 11:25:40 +03:00
Efraim Flashner 166da5b2b6
Merge remote-tracking branch 'origin/staging' 2022-10-26 11:15:22 +03:00