gnu: Add r-badregionfinder.

* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
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Mădălin Ionel Patrașcu 2022-06-27 23:39:36 +02:00 committed by Ricardo Wurmus
parent c969517cec
commit f0d0b6a0c5
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@ -2428,6 +2428,33 @@ (define-public r-bader
can be used for further down-stream analyses such as gene set enrichment.")
(license license:gpl2)))
(define-public r-badregionfinder
(package
(name "r-badregionfinder")
(version "1.24.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BadRegionFinder" version))
(sha256
(base32
"1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"))))
(properties `((upstream-name . "BadRegionFinder")))
(build-system r-build-system)
(propagated-inputs
(list r-biomart
r-genomicranges
r-rsamtools
r-s4vectors
r-variantannotation))
(home-page "https://bioconductor.org/packages/BadRegionFinder")
(synopsis "Identifying regions with bad coverage in sequence alignment data")
(description
"BadRegionFinder is a package for identifying regions with a bad,
acceptable and good coverage in sequence alignment data available as bam
files. The whole genome may be considered as well as a set of target regions.
Various visual and textual types of output are available.")
(license license:lgpl3)))
(define-public r-biocversion
(package
(name "r-biocversion")