From f0d0b6a0c5e3cc5d7232ef16c5ded3dfc458bf01 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?=
 <madalinionel.patrascu@mdc-berlin.de>
Date: Mon, 27 Jun 2022 23:39:36 +0200
Subject: [PATCH] gnu: Add r-badregionfinder.

* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 111785800f..7aef32286a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2428,6 +2428,33 @@ (define-public r-bader
 can be used for further down-stream analyses such as gene set enrichment.")
     (license license:gpl2)))
 
+(define-public r-badregionfinder
+  (package
+    (name "r-badregionfinder")
+    (version "1.24.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BadRegionFinder" version))
+              (sha256
+               (base32
+                "1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"))))
+    (properties `((upstream-name . "BadRegionFinder")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biomart
+           r-genomicranges
+           r-rsamtools
+           r-s4vectors
+           r-variantannotation))
+    (home-page "https://bioconductor.org/packages/BadRegionFinder")
+    (synopsis "Identifying regions with bad coverage in sequence alignment data")
+    (description
+     "BadRegionFinder is a package for identifying regions with a bad,
+acceptable and good coverage in sequence alignment data available as bam
+files.  The whole genome may be considered as well as a set of target regions.
+Various visual and textual types of output are available.")
+    (license license:lgpl3)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")