gnu: Add r-bandits.

* gnu/packages/bioconductor.scm (r-bandits): New variable.
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Mădălin Ionel Patrașcu 2022-06-28 00:34:03 +02:00 committed by Ricardo Wurmus
parent 9b337c2735
commit fe2be9c0cf
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@ -2498,6 +2498,44 @@ (define-public r-bambu
usage.")
(license license:gpl3)))
(define-public r-bandits
(package
(name "r-bandits")
(version "1.12.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BANDITS" version))
(sha256
(base32
"1423djb7cij68y0q2dcp8q7lrcn2fxjn6d25v4qy3w00b2w8ppg9"))))
(properties `((upstream-name . "BANDITS")))
(build-system r-build-system)
(propagated-inputs
(list r-biocparallel
r-data-table
r-doparallel
r-dorng
r-drimseq
r-foreach
r-ggplot2
r-mass
r-r-utils
r-rcpp
r-rcpparmadillo))
(native-inputs (list r-knitr))
(home-page "https://github.com/SimoneTiberi/BANDITS")
(synopsis "Bayesian analysis of differential splicing")
(description
"BANDITS is a Bayesian hierarchical model for detecting differential
splicing of genes and transcripts, via @dfn{DTU} (differential transcript
usage), between two or more conditions. The method uses a Bayesian
hierarchical framework, which allows for sample specific proportions in a
Dirichlet-Multinomial model, and samples the allocation of fragments to the
transcripts. Parameters are inferred via @dfn{MCMC} (Markov chain Monte
Carlo) techniques and a DTU test is performed via a multivariate Wald test on
the posterior densities for the average relative abundance of transcripts.")
(license license:gpl3+)))
(define-public r-biocversion
(package
(name "r-biocversion")