gnu: Add r-awst.
* gnu/packages/bioconductor.scm (r-awst): New variable.
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@ -2317,6 +2317,33 @@ (define-public r-antiprofiles
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tumor samples from healthy controls.")
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(license license:artistic2.0)))
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(define-public r-awst
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(package
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(name "r-awst")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "awst" version))
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(sha256
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(base32
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"0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"))))
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(properties `((upstream-name . "awst")))
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(build-system r-build-system)
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(propagated-inputs (list r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/drisso/awst")
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(synopsis "Asymmetric within-sample transformation")
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(description
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"This package @dfn{awst} (Asymmetric Within-Sample Transformation) that
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regularizes RNA-seq read counts and reduces the effect of noise on the
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classification of samples. AWST comprises two main steps: standardization and
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smoothing. These steps transform gene expression data to reduce the noise of
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the lowly expressed features, which suffer from background effects and low
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signal-to-noise ratio, and the influence of the highly expressed features,
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which may be the result of amplification bias and other experimental
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artifacts.")
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(license license:expat)))
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(define-public r-baalchip
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(package
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(name "r-baalchip")
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