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Author SHA1 Message Date
Antero Mejr 5585fbbfd0
gnu: dwl: Update to 0.4. 
* gnu/packages/wm.scm (dwl): Update to 0.4.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-14 10:43:14 +08:00
Ricardo Wurmus 270db2a56b
gnu: Add xuidesigner. 
* gnu/packages/music.scm (xuidesigner): New variable.
 2023-05-13 18:26:25 +02:00
Ludovic Courtès 18d6173214
gnu: shepherd: Fetch code from 'mirror://gnu'. 
* gnu/packages/admin.scm (shepherd-0.10): Fix URL.
 2023-05-13 17:25:48 +02:00
Ludovic Courtès 134c10241a
services: shepherd: Default to 0.10. 
* gnu/services/shepherd.scm (<shepherd-configuration>)[shepherd]:
Default to SHEPHERD-0.10.
* gnu/home/services/shepherd.scm (<home-shepherd-configuration>)[shepherd]:
Likewise.
 2023-05-13 16:27:55 +02:00
Ludovic Courtès 1d9efb858f
gnu: shepherd: Add 0.10.0. 
* gnu/packages/admin.scm (shepherd-0.10): New variable.
(guile2.2-shepherd): Inherit from SHEPHERD-0.10.
 2023-05-13 16:27:40 +02:00
Guillaume Le Vaillant ed1e792039
gnu: python-sentry-sdk: Disable tests not working with pytest-7. 
* gnu/packages/python-xyz.scm (python-sentry-sdk)[arguments]: Update 'check'
  phase.
 2023-05-13 14:52:17 +02:00
David Thompson 6af7a94446
gnu: guile-opengl: Update to 0.2.0. 
* gnu/packages/gl.scm (guile-opengl): Update to 0.2.0. Remove obsolete build
system hack.
(guile3.0-opengl): Remove obsolete build system hack.
 2023-05-13 07:42:21 -04:00
Vagrant Cascadian 882ca2011e
gnu: diffoscope: Update to 242. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 242.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-13 18:38:28 +08:00
Christopher Baines 9a6bbea9d4
services: nar-herder: Support extra environment vars. 
* gnu/services/guix.scm (nar-herder-configuration-extra-environment-variables):
New procedure.
(nar-herder-shepherd-services): Pass the environment variables to the
shepherd.
* doc/guix.texi (Guix Services): Document it.
 2023-05-13 11:26:37 +01:00
Artyom V. Poptsov cc47c5277d
gnu: ftxui: Build ftxui-benchmark. 
* gnu/packages/cpp.scm (ftxui)[native-inputs]: Add benchmark.
[arguments]: Remove #:phases.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-13 17:54:14 +08:00
宋文武 1fa30c597b
gnu: raylib: Fix audio and use system glfw. 
* gnu/packages/game-development.scm (raylib)[inputs]: Use glfw and pluseaudio.
[arguments]: Set flags for glfw and pulseaudio.
 2023-05-13 17:35:19 +08:00
宋文武 733c8a6c54
gnu: raylib: Update to 4.5.0. 
* gnu/packages/game-development.scm (raylib): Update to 4.5.0.
 2023-05-13 17:35:19 +08:00
Ricardo Wurmus 23ca566e74
gnu: python-rapidjson: Use pyproject-build-system. 
* gnu/packages/python-web.scm (python-rapidjson)[build-system]: Use
pyproject-build-system.
[arguments]: Do not use custom 'build and 'check phases.
 2023-05-13 11:03:52 +02:00
Ricardo Wurmus c77d5eaaf5
gnu: python-markdown-it-py: Simplify by using pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-markdown-it-py)[arguments]: Remove
custom 'build and 'install phases.
[build-system]: Use pyproject-build-system.
 2023-05-13 11:03:52 +02:00
Ricardo Wurmus 1a2eb983cb
gnu: python-sphinx-panels: Use older docutils. 
* gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Replace
python-docutils with python-docutils-0.15.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
 2023-05-13 11:03:52 +02:00
Lars-Dominik Braun cf89a215ce
gnu: ghc-tasty: Add missing dependency on i686-linux. 
Fixes <https://issues.guix.gnu.org/63421>.

* gnu/packages/haskell-check.scm (ghc-tasty)[inputs]: Conditionally
add ghc-unbounded-delays.
 2023-05-13 09:34:35 +02:00
Ricardo Wurmus d67a3622ef
gnu: python-orjson: Fix version string of Python module. 
* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Remove invalid
characters from version string.
 2023-05-12 23:23:12 +02:00
Ricardo Wurmus 351d193eb1
gnu: python-orjson: Reuse phases from pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Include modules from
pyproject-build-system; use their 'build and 'install phases instead of
duplicating their contents.
 2023-05-12 23:22:01 +02:00
Ricardo Wurmus 27341afe53
gnu: python-canonicaljson: Use pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom
'build, 'check, and 'install phases.
[build-system]: Use pyproject-build-system.
 2023-05-12 23:06:34 +02:00
Ricardo Wurmus 1a21f4117e
gnu: python-pyproject-metadata: Simplify by using pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
 2023-05-12 22:59:41 +02:00
Ricardo Wurmus db3d74008a
gnu: python-seaborn: Simplify by using pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
 2023-05-12 22:56:42 +02:00
Ricardo Wurmus 206815b796
gnu: shrinkwrap: Use pyproject-build-system. 
* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
 2023-05-12 22:53:46 +02:00
Ricardo Wurmus e4ca1bcea5
gnu: jamm: Use G-expression. 
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression.
 2023-05-12 22:50:08 +02:00
Ricardo Wurmus 662e2e82b1
gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY. 
* gnu/packages/bioinformatics.scm (arriba)[arguments]:
Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop
trailing #T from build phases.
 2023-05-12 22:40:18 +02:00
Ricardo Wurmus 001d9b1c64
gnu: multichoose: Clean up. 
* gnu/packages/bioinformatics.scm (multichoos): Fix indentation.
[arguments]: Use G-expression.
 2023-05-12 22:33:44 +02:00
Ricardo Wurmus 6d72af0747
gnu: samblaster: Update to 0.1.26. 
* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26.
 2023-05-12 22:31:22 +02:00
Ricardo Wurmus 6331e41cde
gnu: samblaster: Simplify. 
* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
 2023-05-12 22:29:38 +02:00
Ricardo Wurmus 7da3ca1bd7
gnu: methyldackel: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
 2023-05-12 22:27:17 +02:00
Ricardo Wurmus 7a199bb74c
gnu: methyldackel: Simplify arguments. 
* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
 2023-05-12 22:24:30 +02:00
Ricardo Wurmus 5d446e439d
gnu: phast: Simplify by using G-expression. 
* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
 2023-05-12 22:23:23 +02:00
Ricardo Wurmus fac8721bfd
gnu: ribotaper: Simplify with G-expression. 
* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
 2023-05-12 22:21:14 +02:00
Ricardo Wurmus 0e20ed322d
gnu: sra-tools: Do link with libxml2. 
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
 2023-05-12 21:54:01 +02:00
Ricardo Wurmus 8ba3bf6564
gnu: ncbi-vdb: Ensure that vdb-sqlite is installed. 
The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
 2023-05-12 21:51:41 +02:00
Mădălin Ionel Patrașcu 263f235cd0
gnu: Add python-mgatk. 
* gnu/packages/bioinformatics.scm (python-mgatk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-12 15:30:44 +02:00
宋文武 40310efde9
system: default-skeletons: Merge search-paths of multiple profiles. 
Fixes <https://issues.guix.gnu.org/20255>.

* gnu/system/shadow.scm (default-skeletons)[bash_profile, zprofile]:
Merge search-paths from multiple profiles via "guix package".
 2023-05-12 20:27:06 +08:00
宋文武 6419ca7fd7
gnu: Add Free as in Freedom (2.0). 
* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2023-05-12 20:22:02 +08:00
Pierre Neidhardt b363fab46f
gnu: sbcl-serapeum: Update to 20230511. 
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
 2023-05-12 11:56:20 +02:00
Ricardo Wurmus e3e011a081
gnu: python-lightning-cloud: Use older version of fastapi. 
The variant of the fastapi package must match that of
python-pytorch-lightning.

* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
 2023-05-12 10:50:01 +02:00
Mădălin Ionel Patrașcu a070eb7a15
gnu: Add python-optparse-pretty. 
* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-12 09:43:20 +02:00
Mădălin Ionel Patrașcu 9d05f9a9f5
gnu: Add r-dropletutils. 
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
 2023-05-12 09:36:26 +02:00
Mădălin Ionel Patrașcu a5bae9c748
gnu: Add r-ggpattern. 
* gnu/packages/cran.scm (r-ggpattern): New variable.
 2023-05-12 09:17:07 +02:00
Mădălin Ionel Patrașcu 6c6e2b5fbc
gnu: Add r-gridpattern. 
* gnu/packages/cran.scm (r-gridpattern): New variable.
 2023-05-12 09:17:07 +02:00
Greg Hogan d07342b166
gnu: texlive-datetime2: Add needed propagated-inputs. 
Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)

* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-05-11 23:56:24 +02:00
Fabio Natali 277c24442c
gnu: Add emacs-framemove. 
* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-05-11 23:55:43 +02:00
Simon Tournier 60cf9866cf
gnu: texlive-ddphonism: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:28 +02:00
Simon Tournier 713f4e57f7
gnu: texlive-totpages: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:28 +02:00
Simon Tournier 012a514edb
gnu: texlive-totcount: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:27 +02:00
Simon Tournier 43c0bf757a
gnu: texlive-ncctools: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:27 +02:00
Simon Tournier b924254163
gnu: texlive-soulutf8: Replace deprecated inputs. 
* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:26 +02:00
Simon Tournier 345ec9f33a
gnu: texlive-xetex: Replace deprecated inputs. 
* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:24 +02:00