gnu: Add r-dropletutils.

* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
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Mădălin Ionel Patrașcu 2023-05-11 18:30:16 +02:00 committed by Ricardo Wurmus
parent a5bae9c748
commit 9d05f9a9f5
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@ -4897,6 +4897,50 @@ (define-public r-drimseq
results.")
(license license:gpl3+)))
(define-public r-dropletutils
(package
(name "r-dropletutils")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DropletUtils" version))
(sha256
(base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"))))
(properties `((upstream-name . "DropletUtils")))
(build-system r-build-system)
(propagated-inputs
(list r-beachmat
r-bh
r-biocgenerics
r-biocparallel
r-delayedarray
r-delayedmatrixstats
r-dqrng
r-edger
r-genomicranges
r-hdf5array
r-iranges
r-matrix
r-r-utils
r-rcpp
r-rhdf5
r-rhdf5lib
r-s4vectors
r-scuttle
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/DropletUtils")
(synopsis "Utilities for handling single-cell droplet data")
(description
"This package provides a number of utility functions for handling
single-cell RNA-seq data from droplet technologies such as 10X Genomics. This
includes data loading from count matrices or molecule information files,
identification of cells from empty droplets, removal of barcode-swapped
pseudo-cells, and downsampling of the count matrix.")
(license license:gpl3)))
(define-public r-dss
(package
(name "r-dss")