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gnu: samblaster: Simplify.

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* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
This commit is contained in:
Ricardo Wurmus 2023-05-12 22:29:38 +02:00
parent 7da3ca1bd7
commit 6331e41cde
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GPG key ID: 197A5888235FACAC
1 changed files with 17 additions and 18 deletions
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gnu/packages/bioinformatics.scm
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@ -17768,31 +17768,30 @@ (define-public samblaster
(name "samblaster")
(version "0.1.24")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GregoryFaust/samblaster")
(commit (string-append "v." version))))
(file-name (git-file-name name version))
(sha256
(base32
"0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"))))
(method git-fetch)
(uri (git-reference
(url "https://github.com/GregoryFaust/samblaster")
(commit (string-append "v." version))))
(file-name (git-file-name name version))
(sha256
(base32
"0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are none
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(install-file "samblaster"
(string-append (assoc-ref outputs "out") "/bin"))
#t)))))
(list
#:tests? #f ; there are none
#:phases
#~(modify-phases %standard-phases
(delete 'configure) ;There is no configure phase.
(replace 'install
(lambda _
(install-file "samblaster" (string-append #$output "/bin")))))))
(home-page "https://github.com/GregoryFaust/samblaster")
(synopsis "Mark duplicates in paired-end SAM files")
(description "Samblaster is a fast and flexible program for marking
duplicates in read-id grouped paired-end SAM files. It can also optionally
output discordant read pairs and/or split read mappings to separate SAM files,
and/or unmapped/clipped reads to a separate FASTQ file. When marking
and/or unmapped/clipped reads to a separate FASTQ file. When marking
duplicates, samblaster will require approximately 20MB of memory per 1M read
pairs.")
(license license:expat)))