TakeV/guix
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
124537 commits 103 branches 35 tags 496 MiB
Commit graph

124537 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
4e2c4c5d4d
gnu: r-climaemet: Update to 1.2.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.2.0.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
34d08dc157
gnu: r-ggfittext: Update to 0.10.1. 
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.1.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
bf9cd9521a
gnu: r-htscluster: Update to 2.0.11. 
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.11.
 2023-09-14 00:04:05 +02:00
Ricardo Wurmus
8f59ac151f
gnu: r-abn: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.0.
[propagated-inputs]: Add r-mclogit and r-stringi.
 2023-09-13 23:14:38 +02:00
Ricardo Wurmus
4676f07f6d
gnu: r-glmnetutils: Update to 1.1.9. 
* gnu/packages/cran.scm (r-glmnetutils): Update to 1.1.9.
 2023-09-13 23:02:37 +02:00
Ricardo Wurmus
b3b369f990
gnu: r-hmisc: Update to 5.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-1.
 2023-09-13 22:58:18 +02:00
Ricardo Wurmus
ab1f8495f9
gnu: r-rstan: Update to 2.26.23. 
* gnu/packages/cran.scm (r-rstan): Update to 2.26.23.
[native-inputs]: Remove pandoc.
[propagated-inputs]: Add r-quickjsr.
 2023-09-13 22:57:03 +02:00
Ricardo Wurmus
455dadc41a
gnu: r-iheatmapr: Update to 0.7.0. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.0.
[source]: Delete minified plotly JavaScript.
[native-inputs]: Add esbuild and js-plotly.
[arguments]: Add phase to minify plotly.js.
 2023-09-13 22:51:14 +02:00
Ricardo Wurmus
f2d690c6c5
gnu: r-leaflet: Update to 2.2.0. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.0.
[source]: Do not delete jquery.min.js, because it is no longer included.
[arguments]: Adjust minification accordingly.
[native-inputs]: Remove js-jquery.
[propagated-inputs]: Remove r-base64enc and r-markdown; add r-jquerylib and
r-xfun.
 2023-09-13 22:41:25 +02:00
Ricardo Wurmus
9049506d8b
gnu: python-hicmatrix: Remove custom 'check phase. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Remove custom
'check phase.
 2023-09-13 22:19:23 +02:00
Ricardo Wurmus
bf98283741
gnu: r-radiant-data: Update to 1.6.1. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.1.
[propagated-inputs]: Add r-arrow.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
080d088016
gnu: r-arrow: Update to 13.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
6739c534f8
gnu: apache-arrow: Update to 13.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 13.0.0.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
aaaaa2ea07
gnu: r-minqa: Update to 1.2.6. 
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.6.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
4e8ec5a16b
gnu: r-dt: Update to 0.29. 
* gnu/packages/statistics.scm (r-dt): Update to 0.29.
[propagated-inputs]: Add r-httpuv.
 2023-09-13 22:18:27 +02:00
Mădălin Ionel Patrașcu
2c1d86e2e0
gnu: python-hicmatrix: Remove syntax error in setup.py. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Add phase
remove-invalid-syntax.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-09-13 22:17:21 +02:00
Ricardo Wurmus
dc172966ba
gnu: Add r-quickjsr. 
* gnu/packages/cran.scm (r-quickjsr): New variable.
 2023-09-13 22:17:21 +02:00
Ricardo Wurmus
b6441f7bd0
upstream: Compare symbols to symbols. 
The UNCHANGED? comparison would always yield #FALSE, because we have been
comparing lists of strings with lists of symbols.

* guix/upstream.scm (update-package-inputs): Convert string labels to symbols
before comparison.
 2023-09-13 22:17:21 +02:00
Andy Tai
67268d9a81
gnu: octave-cli: Update to 8.3.0 
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0

Signed-off-by: Eric Bavier <bavier@posteo.net>
 2023-09-13 09:22:28 -05:00
Andre A. Gomes
4f933f977d
gnu: nyxt: Update to 3.7.0. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.7.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:38:18 +02:00
Andre A. Gomes
828b08d585
gnu: cl-nasdf: Update to 0.1.8. 
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.8.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:37:15 +02:00
Artyom Bologov
3007f77596
gnu: cl-njson: Update to 1.2.0. 
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.2.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:32:42 +02:00
Navid Afkhami
cda20190bc
gnu: Add r-interactivedisplay. 
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-09-13 12:10:06 +02:00
Andreas Enge
6a01c1142b
gnu: hdf4, hdf4-alt: Update to 4.2.16-2. 
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches
that do not apply any more.
[arguments]: Drop configure flag related to libtirpc. Add configure flag
to build xdr library and drop unneeded substitutions.
* gnu/packages/patches/hdf4-architectures.patch,
gnu/packages/patches/hdf4-tirpc.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.
 2023-09-13 11:18:42 +02:00
Munyoki Kilyungi
c30c9df5e9
gnu: yoyo-migrations: Update to 8.2.0. 
* gnu/packages/databases.scm (yoyo-migrations): Update to 8.2.0.
[propagated-inputs]: Add python-importlib-metadata.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:21 +01:00
Zheng Junjie
79988ab742
gnu: libvterm: Update arguments style. 
* gnu/packages/terminals.scm (libvterm)[arguments]: Update arguments style.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Zheng Junjie
8d5304b143
gnu: libvterm: Update to 0.3.3. 
* gnu/packages/terminals.scm (libvterm): Update to 0.3.3.
[source]: Use launchpad.net url.
[arguments]: Use CC-FOR-TARGET.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Hendursaga
901eaca92b
gnu: tennix: Update to 1.3.4. 
* gnu/packages/games.scm (tennix): Update to 1.3.4.
[arguments]<#:phases>: Update style and remove fix-include phase.
[inputs]: Remove labels, update to SDL2, add SDL2_gfx dependency.
[license]: Remove LGPL license, as SDL_rotozoom is no longer included.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Sharlatan Hellseher
7f150a1895
gnu: python-qtsass: Update to 0.4.0. 
This also fixes test failures preventing the package from building.

* gnu/packages/python-xyz.scm (python-qtsass): Update to 0.4.0, fix build.
[native-inputs]: Add python-flaky.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Sharlatan Hellseher
de2ee9cae6
gnu: python-libsass: Update to 0.22.0. 
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.22.0.
[phases]: Add new phase 'silent-failing-tests and disable 2 failing
tests to complete build.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Valter Nazianzeno
10bc07671e
gnu: emilua: Update to 0.4.3. 
* gnu/packages/lua.scm (emilua): Update to 0.4.3.
[source]: Remove recursive? and replace with inputs.
[arguments]: Update style, add patch phase, enable tests and enable some more
features.
[native-inputs]: Add gperf, gawk and xdd.
[inputs]: Add emilua-http and trial-protocol as origin is no longer recursive,
also add serd, sord, libcap and liburing.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:14 +01:00
Ricardo Wurmus
07d43c66d5
gnu: Add swineherd. 
* gnu/packages/admin.scm (swineherd): New variable.
 2023-09-12 23:30:58 +02:00
Maxim Cournoyer
4cb2e08b8e
gnu: python-django-4.0: Use $TZDIR. 
* gnu/packages/django.scm (python-django-4.0) [native-search-paths]: Use
$TZDIR.
 2023-09-12 10:05:00 -04:00
Maxim Cournoyer
f0e05411bd
search-paths: Add $TZDIR. 
* guix/search-paths.scm ($TZDIR): New search path.
 2023-09-12 10:03:44 -04:00
Maxim Cournoyer
076b3384df
gnu: qemu: Reinstate the iothreads-commit-active test. 
* gnu/packages/virtualization.scm (qemu) [arguments]: Add set-SOCK_DIR phase.
(qemu-minimal) [arguments]: Delete the disable-extra-tests phase.
 2023-09-12 09:59:47 -04:00
Ricardo Wurmus
9996896dc2
gnu: Add python-peaks2utr. 
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
 2023-09-12 12:28:32 +02:00
Ricardo Wurmus
30ec6f2fb5
gnu: macs: Update to 2.2.9.1. 
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Move python-cython from here...
[inputs]: ...and python-numpy from here...
[propagated-inputs]: ...to here.
 2023-09-12 12:28:32 +02:00
宋文武
e2a7c227de
gnu: xfce4-terminal: Update to 1.1.0. 
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.1.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:39:21 +01:00
Artyom V. Poptsov
cdddc6bc28
gnu: guile-png: Update to 0.7.1 
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.1.
[arguments]: Update style and delete "strip" phase.
[description]: Update.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:36:29 +01:00
Hilton Chain
8294f45dfc
gnu: python-cgatcore: Update to 0.6.15. 
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.15.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:31:23 +01:00
Hilton Chain
d6ad06cd6c
gnu: python-apsw: Update to 3.42.0.1. 
* gnu/packages/databases.scm (python-apsw): Update to 3.42.0.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:30:10 +01:00
Hilton Chain
8d51e31f86
gnu: sqlite-next: Update to 3.42.0. 
* gnu/packages/sqlite.scm (sqlite-next): Update to 3.42.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:30:08 +01:00
Andy Tai
3acd355455
gnu: svt-av1: Update to 1.7.0. 
* gnu/packages/video.scm (svt-av1): Update to 1.7.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:25:09 +01:00
Christopher Baines
93cb2880d6
gnu: nar-herder: Use guile-next. 
As this provides suspendable soft/custom ports, which I'd like to use.

* gnu/packages/package-management.scm (nar-herder)[native-inputs,inputs]: Use
guile-next.
 2023-09-12 08:15:07 +01:00
Christopher Baines
53f510dad6
gnu: skalibs: Remove i586-gnu from %supported-systems. 
* gnu/packages/skarnet.scm (skalibs)[supported-systems]: Remove i586-gnu.
 2023-09-12 08:03:49 +01:00
Christopher Baines
0e08ad7f19
gnu: linux-libre-headers: Remove i586-gnu from supported-systems. 
As I don't think attempting to build for the Hurd is useful.

* gnu/packages/heads.scm (make-linux-libre-headers*): Remove i586-gnu from
supported-systems.
 2023-09-12 08:03:49 +01:00
Christopher Baines
288799d3e8
gnu: musl-cross: Remove i586-gnu from supported-systems. 
As I don't think musl supports the Hurd.

* gnu/packages/heads.scm (musl-cross)[supported-systems]: Remove i586-gnu.
 2023-09-12 08:03:49 +01:00
Maxim Cournoyer
daeeaa2216
gnu: emacs-magit: Update to 3.3.0-6.7a1d503. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-6.7a1d503.
 2023-09-11 23:48:19 -04:00
Maxim Cournoyer
2a7f031ca9
gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs. 
This reinstate commit a5b5df7f7f with a fix to
the inner expand-uri procedure.
 2023-09-11 23:39:13 -04:00
Maxim Cournoyer
a9d5d1d9dd
Revert "gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs." 
This reverts commit a5b5df7f7f.  Pushed too
early.
 2023-09-11 23:30:43 -04:00