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113720 commits

Author SHA1 Message Date
Nicolas Goaziou 81519a3ccf
gnu: emacs-posframe: Update to 1.4.2.
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.4.2.
2023-04-25 01:13:35 +02:00
Dominik Delgado Steuter via Guix-patches via 74f2a0bd79
gnu: Add texstudio.
* gnu/packages/tex.scm (texstudio): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:13:34 +02:00
Janneke Nieuwenhuizen 5eb1d1b648
gnu: dezyne: Add patch to avoid "Exec format error".
This fixes

    In execvp of ./test/all/parse_import_order/run: Exec format error

on shell scripts that lack a shebang.

* gnu/packages/patches/dezyne-add-missing-shebangs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dezyne.scm (dezyne): Use it.
2023-04-24 21:04:11 +02:00
Andreas Enge 92dd588b81
Merge remote-tracking branch 'origin/master' into core-updates 2023-04-24 20:43:01 +02:00
Janneke Nieuwenhuizen c7cdd4a6c7
gnu: emacs-git-timemachine: Update to 4.11-0-13769fb6.
This fixes #62932;

    command-execute: Symbol’s function definition is void: define-transient-command

* gnu/packages/emacs-xyz.scm (emacs-git-timemachine)[source]: Update outdated
source URI.  Update to commit "13769fb603ae88c64566529eae4525ce88026e86".  The
4.11 latest release is four years old.
2023-04-24 20:05:09 +02:00
Ricardo Wurmus 09d2976c86
gnu: python-plotly-2.4.1: Patch for Python 3.10 changes.
* gnu/packages/graph.scm (python-plotly-2.4.1)[arguments]: Add phase
'python-compatibility.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus bca1496f72
gnu: multiqc: Update to 1.14.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.14.
[build-system]: Use pyproject-build-system.
[arguments]: Simplify check phase; restore sanity-check phase.
[propagated-inputs]: Add python-rich-click.
[native-inputs]: Update test data.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus 523e5ee2f1
gnu: Add python-rich-click.
* gnu/packages/python-xyz.scm (python-rich-click): New variable.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus 9703ecc47b
gnu: macs: Patch version check for Python.
* gnu/packages/bioinformatics.scm (macs)[source]: Patch check for Python >
3.6.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus 913668e879
gnu: salmon: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (salmon): Update to 1.10.1.
[inputs]: Replace cereal-1.3.0 with cereal; add htscodecs.
[native-inputs]: Update hash of pufferfish sources.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus b8a0a10308
gnu: Add htscodecs.
* gnu/packages/bioinformatics.scm (htscodecs): New variable.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus 0bb60ed3ee
gnu: cereal-1.3.0: Update doctest.h.
* gnu/packages/serialization.scm (cereal-1.3.0)[native-inputs]: Add gcc-10 and
the sources of the cereal package.
[arguments]: Add a phase to replace the included doctest.h with the variant
from the cereal sources; disable -Werror.
[source]: Delete included doctest.h.
2023-04-24 19:49:04 +02:00
Ricardo Wurmus 93d95bb843
gnu: cereal: Use GCC 10.
* gnu/packages/serialization.scm (cereal)[native-inputs]: Add gcc-10.
2023-04-24 19:49:04 +02:00
Maxim Cournoyer e29571afc6
guix-install.sh: Fix GUIX_ALLOW_OVERWRITE condition.
Before this change, the "Overwriting existing installation!" would be
displayed erroneously.

* etc/guix-install.sh (sys_create_store): Fix overwrite conditional.
2023-04-24 12:51:41 -04:00
John Kehayias a0d49a726a
gnu: python-check-manifest: Update to 0.49.
* gnu/packages/python-xyz.scm (python-check-manifest): Update to 0.49.
[propagated-inputs]: Remove python-tomli.
2023-04-24 12:23:49 -04:00
John Kehayias 0c297b9b70
gnu: python-eventlet: Skip two failing tests.
* gnu/packages/python-xyz.scm (python-eventlet)[arguments]: In 'check' phase,
skip two more tests which are failing with Python 3.10 and have upstream bug
reports.
2023-04-24 11:37:16 -04:00
Arun Isaac 23f11afacd
Add mumi config.
* .mumi/config: New file.
* .gitignore: Add .mumi/current-issue.
2023-04-24 15:32:54 +01:00
Arun Isaac 4b7294cfb8
gnu: mumi: Add bash-minimal to inputs.
* gnu/packages/mail.scm (mumi)[inputs]: Add bash-minimal.
2023-04-24 15:32:54 +01:00
Arun Isaac ec020345d1
gnu: mumi: Update to 0.0.5-2.85d5efb.
* gnu/packages/mail.scm (mumi): Update to 0.0.5-2.85d5efb.
2023-04-24 15:32:54 +01:00
Arun Isaac 70b52b5614
gnu: mumi: Move to Savannah.
* gnu/packages/mail.scm (source, home-page): Move to Savannah.
2023-04-24 15:32:54 +01:00
Janneke Nieuwenhuizen d0575a9847
gnu: dezyne: Update to 2.17.2.
* gnu/packages/dezyne.scm (dezyne): Update to 2.17.2.
2023-04-24 15:19:16 +02:00
Josselin Poiret 9e81b4da2d
gnu: python-shiboken-2: Do not rely on _Py_Mangle being available.
* gnu/packages/patches/python-shiboken-2-compat.patch: Fix the patch
according to upstream.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-24 12:46:42 +02:00
Andy Tai 9350347dab
gnu: openshot: Update to 3.1.0.
* gnu/packages/audio.scm (libopenshot-audio): Update to 0.3.1.
* gnu/packages/video.scm (libopenshot): Update to 0.3.1.
(openshot): Update to 3.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-24 12:22:27 +02:00
Raphaël Mélotte 589aa32fbd
gnu: eid-mw: Update to 5.1.10.
* gnu/packages/security-token.scm (eid-mw): Update to 5.1.10

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-24 12:18:45 +02:00
Raphaël Mélotte f4a6a65d68
gnu: fatrace: Update to 0.17.0.
* gnu/packages/monitoring.scm (fatrace): Update to 0.17.0

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-24 12:17:17 +02:00
Ludovic Courtès a386edb4dc
gnu: openmpi: Update to 4.1.5.
* gnu/packages/mpi.scm (openmpi): Update to 4.1.5.
2023-04-24 10:29:42 +02:00
Ludovic Courtès 7931ac810b
read-print: 'pretty-print-with-comments' keeps newlines on long strings.
* guix/read-print.scm (printed-string)[preserve-newlines?]: New
procedure.
Use it to preserve newlines on long strings.
* tests/read-print.scm: Add test.
2023-04-24 10:27:13 +02:00
Liliana Marie Prikler 827df9d1dd
gnu: python-magic: Update to 0.4.27.
* gnu/packages/patches/python-magic-python-bytecode.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/python-xyz.scm (python-magic): Update to 0.4.27.
[source]<patches>: Remove field.
[#:phases]<check>: Do not invoke ‘tests.py’.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-24 10:23:59 +02:00
Ricardo Wurmus 794e8880b9
gnu: openldap-for-linphone: Hide it.
We don't want this to show up when searching for "openldap".

* gnu/packages/openldap.scm (openldap-for-linphone): Wrap in HIDDEN-PACKAGE
and add a comment.
2023-04-24 09:56:32 +02:00
Ricardo Wurmus e2c1506e86
gnu: inspekt3d: Adjust to changes in libfive.
* gnu/packages/engineering.scm (inspekt3d)[arguments]: Use G-expression; patch
file to avoid loading removed extension; adjust name of libfive library.
2023-04-24 09:53:06 +02:00
Ricardo Wurmus 2d4888b791
gnu: inspekt3d: Simplify snippet.
* gnu/packages/engineering.scm (inspekt3d)[source]: Simplify snippet.
2023-04-24 09:52:29 +02:00
Ricardo Wurmus 9b381235e0
gnu: libfive: Update to 0-5.b1ea998.
* gnu/packages/engineering.scm (libfive): Update to 0-5.b1ea998.
[arguments]: Set HOME variable to fix autocompilation; set GUILE_CCACHE_DIR to
override default target directory for compiled Guile files; add phases
'fix-library-location and 'install-scm-files.
2023-04-24 09:51:44 +02:00
John Kehayias 0094b2b25f
gnu: python-sure: Update to 2.0.1.
* gnu/packages/python-xyz.scm (python-sure): Update to 2.0.1.
[native-inputs]: Add python-rednose.
2023-04-24 00:25:34 -04:00
John Kehayias 519694209e
gnu: python-boltons: Update to 23.0.0.
* gnu/packages/python-xyz.scm (python-boltons): Update to 23.0.0.
2023-04-24 00:18:50 -04:00
John Kehayias ee40b6684c
gnu: python-pynndescent: Update to 0.5.10.
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.10.
2023-04-23 23:59:22 -04:00
John Kehayias 6b9e3f0dd1
gnu: python-configargparse: Update to 1.5.3.
* gnu/packages/python-xyz.scm (python-configargparse): Update to 1.5.3.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove previous 'check' phase.
[native-inputs]: Add python-mock and python-pytest, remove python-pyyaml.
2023-04-23 23:39:32 -04:00
Leo Famulari a70e9378cd
gnu: python-scikit-learn: Update to 1.2.2.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.2.2.
2023-04-23 22:52:02 -04:00
Leo Famulari 94f0b9f6bf
gnu: python-joblib: Update to 1.1.1.
* gnu/packages/python-xyz.scm (python-joblib): Update to 1.1.1.
2023-04-23 22:51:58 -04:00
John Kehayias 779575cb33
gnu: python-ecdsa: Fix faulty commit.
Fix previous commit, which did not properly add the test to be skipped and
repeated the existing skipped test.  There is only one new test to be skipped.

* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: In the 'check'
phase, properly format the string for skipped tests.
2023-04-23 20:59:36 -04:00
John Kehayias 94a2e94a26
gnu: python-ecdsa: Skip two failing tests.
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: In 'check' phase,
skip a couple more tests.
2023-04-23 20:48:20 -04:00
Leo Famulari 4e0186ec7f
gnu: libmediainfo and mediainfo: Update to 23.03.
* gnu/packages/video.scm (libmediainfo, mediainfo): Update to 23.03.
2023-04-23 20:36:13 -04:00
Leo Famulari a0b2b4f1e9
gnu: libmediainfo and mediainfo: Fix build.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Add a shebang to
the autogen.sh script in the 'change-to-build-dir' phases.
2023-04-23 20:36:13 -04:00
Leo Famulari 5bcf10867d
gnu: eyed3: Update to 0.9.7.
* gnu/packages/mp3.scm (eyed3): Update to 0.9.7.
[propagated-inputs]: Remove python-grako, python-magic, and python-pathlib.
2023-04-23 20:36:13 -04:00
Leo Famulari 70117d55f5
gnu: OpenImageIO: Use the correct source hash.
This is a followup to commit 5fda088fb1

* gnu/packages/graphics.scm (openimageio)[source]: Fix the hash.
2023-04-23 20:34:57 -04:00
Leo Famulari 5fda088fb1
gnu: OpenImageIO: Update to 2.2.21.0.
This fixes the build with GCC 11.

* gnu/packages/graphics.scm (openimageio): Update to 2.2.21.0.
2023-04-23 19:05:16 -04:00
Leo Famulari 186e516400
gnu: OpenColorIO: Fix build with GCC 11.
* gnu/packages/patches/opencolorio-fix-build-with-gcc11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-processing.scm (opencolorio)[source]: Use it.
2023-04-23 19:05:15 -04:00
Leo Famulari 2a8e92f2d9
gnu: shotwell: Fix build.
* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add vala.
2023-04-23 19:05:15 -04:00
Ricardo Wurmus bdd48e3cb9
gnu: liblinphone: Restore special openldap variant.
This is a partial revert of commit f2166cface.

* gnu/packages/openldap.scm (openldap-for-linphone): Restore this variable.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Replace openldap with
openldap-for-linphone.
2023-04-24 00:12:41 +02:00
John Kehayias bacee2da69
gnu: python-ledgerblue: Disable tests.
* gnu/packages/finance.scm (python-ledgerblue)[arguments]: Disable
tests (there are none).
2023-04-23 17:07:40 -04:00
Ludovic Courtès e6a88bcf16
gnu: python-django@3.2: Update to 3.2.18.
Fixes the 'test_custom_fields' failure:

  9da46345d8

* gnu/packages/django.scm (python-django-3.2): Update to 3.2.18.
2023-04-23 22:40:51 +02:00