TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
113720 commits 102 branches 35 tags 561 MiB
Commit graph

113720 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus f2e90d6f43
gnu: hisat: Build with GCC 10. 
* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
 2023-04-25 19:30:43 +02:00
Ricardo Wurmus 0a4fa99b39
gnu: kallisto: Update to 0.48.0. 
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0.
[arguments]: Remove trailing #T from build phase.
 2023-04-25 19:28:42 +02:00
Ricardo Wurmus 7ae5325bf1
gnu: bpp-core: Build with GCC 10. 
* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
 2023-04-25 19:12:57 +02:00
Ricardo Wurmus 2c09cc19e6
gnu: vcflib: Update to 1.0.9. 
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9.
[source]: Update snippet.
[inputs]: Add curl, pybind11, and wfa2-lib.
[arguments]: Adjust and reformat.
 2023-04-25 19:10:19 +02:00
Ricardo Wurmus 4ad51f5914
gnu: tabixpp: Update to 1.1.2. 
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2.
[source]: Simplify snippet.
[inputs]: Add curl.
[arguments]: Simplify and reformat.
 2023-04-25 19:10:19 +02:00
Ricardo Wurmus 8664c6230e
gnu: Add wfa2-lib. 
* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
 2023-04-25 19:10:18 +02:00
Josselin Poiret 8c5ba69d6e
gnu: biber: Fix build with new Perl. 
* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from
upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7.
* gnu/packages/tex.scm (biber): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2023-04-25 18:42:22 +02:00
Vivien Kraus 74038cf66e
gnu: gcc: Do not build gcov on MinGW. 
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when
targetting mingw.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-25 17:20:19 +02:00
Nicolas Graves 7f0fbd0463
gnu: nerd-dictation: Add package variants. 
* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove.
(nerd-dictation-gexp): New procedure.
(nerd-dictation/xdotool, nerd-dictation/sox-xdotool)
(nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-25 17:19:21 +02:00
Bruno Victal 9be1ee6a49
services: tor: Deprecate 'tor-hidden-service' procedure. 
Due to (now renamed) 'hidden-service' record type not being exported, the only
way Onion services (formely hidden services) could have worked is through the
now deprecated 'tor-hidden-service' procedure.

This commit updates the Tor service documentation, corrects some inconsistently
named accessors in <tor-configuration> record-type, renames and refactors
tor-hidden-service-configuration to tor-onion-service-configuration using
define-configuration and also exports it, allowing Onion services to be
configured directly within a <tor-configuration> record.
Lastly, it also deprecates the 'tor-hidden-service' procedure.

* doc/guix.texi (Networking Services): Substitute mentions of “Hidden services”
with “Onion Services”. Add a Tor Onion service configuration example.
Document <tor-onion-service-configuration>. Remove mention of
'tor-hidden-service' procedure.
* gnu/services/networking.scm: Export tor-configuration-tor,
tor-configuration-config-file, tor-configuration-hidden-services,
tor-configuration-socks-socket-type, tor-configuration-control-socket-path,
tor-onion-service-configuration, tor-onion-service-configuration?,
tor-onion-service-configuration-name, tor-onion-service-configuration-mapping.
(<tor-configuration>)[control-socket?]: Rename accessor.
(<hidden-service>): Replace with …
(<tor-onion-service-configuration>): … this.
(tor-configuration->torrc): Update record-type name.
(tor-activation): Ditto.
(tor-hidden-service-type): Remove variable.
(tor-hidden-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-25 17:19:21 +02:00
Lars-Dominik Braun c354a345b9
gnu: ghc-8.10: Avoid testsuite timeouts on i686. 
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase
'skip-failing-tests-i686-cuirass.
 2023-04-25 16:54:57 +02:00
Ricardo Wurmus 3a37e3ecd8
gnu: lofreq: Set file timestamps to 1980s. 
This keeps Python from complaining: "ZIP does not support timestamps before
1980".

* gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase
'set-source-file-times-to-1980.
 2023-04-25 16:17:49 +02:00
Ricardo Wurmus 0ad4a4d155
gnu: lofreq: Drop input labels. 
* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
 2023-04-25 16:17:49 +02:00
Ricardo Wurmus 1fca85cd88
gnu: ivar: Update to 1.4.2. 
* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2.
[arguments]: Remove -Werror flag.
 2023-04-25 16:17:49 +02:00
Ricardo Wurmus f69f346289
gnu: propeller-gcc-4: Use MODIFY-INPUTS. 
* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use
MODIFY-INPUTS and drop package label.
 2023-04-25 16:17:49 +02:00
Ricardo Wurmus b9162199b3
gnu: propeller-gcc-4: Use G-expression. 
* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression
because the parent GCC package uses them too.
 2023-04-25 16:17:49 +02:00
Andreas Enge b380fbca88
gnu: trurl: Correct inputs. 
* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by
curl, which is version 7.85.0.
 2023-04-25 15:21:05 +02:00
Andreas Enge c919bfefd9
Merge remote-tracking branch 'origin/master' into core-updates 2023-04-25 15:19:29 +02:00
Lars-Dominik Braun 472706ae2f
gnu: python-asyncssh: Update to 2.13.1. 
Includes fix for python-cryptography>=39 disallowing SHA-1 signatures,
which caused the testsuite to fail.

* gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
 2023-04-25 14:27:14 +02:00
Efraim Flashner 0daa747de2
gnu: alacritty: Patch reference to xdg-open. 
* gnu/packages/terminals.scm (alacritty)[arguments]: Add a phase to add
an absolute reference to xdg-open.
[inputs]: Add xdg-utils.
 2023-04-25 14:06:14 +03:00
Nicolas Goaziou 95787ffaa2
gnu: emacs-eshell-syntax-highlighting: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.5.
 2023-04-25 11:47:52 +02:00
Nicolas Goaziou c9c4fea7c5
gnu: nethack: Update to 3.6.7. 
* gnu/packages/games.scm (nethack): Update to 3.6.7.
 2023-04-25 11:47:51 +02:00
Sharlatan Hellseher 11f078a1fb
gnu: Add trurl. 
* gnu/packages/curl.scm (trurl): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 11:47:51 +02:00
Nicolas Goaziou 26cdc7be84
gnu: emacs-auctex: Update to 13.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.0.
 2023-04-25 11:47:51 +02:00
Joseph LaFreniere af3daff5ea
gnu: Add emacs-xonsh-mode. 
* gnu/packages/emacs-xyz.scm (emacs-xonsh-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 11:47:51 +02:00
Ricardo Wurmus ce0bdceb49
gnu: python-importlib-resources: Update to 5.12.0. 
* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase to avoid "pip install".
[native-inputs]: Remove python-toml; add python-flake8, python-pytest,
python-pytest-black, python-pytest-checkdocs, python-pytest-cov,
python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and
python-setuptools-57.
[propagated-inputs]: Add python-zipp.
 2023-04-25 11:32:10 +02:00
Christopher Baines 8a5b6d5382
gnu: guix-build-coordinator: Update to 0-79.6a4e827. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-79.6a4e827.
 2023-04-25 10:25:55 +01:00
Antero Mejr a50f0dc5ca
gnu: schismtracker: Update to 20221201. 
* gnu/packages/music.scm (schismtracker): Update to 20221201.
[source]: Convert snippet to gexp.
[arguments]: Convert to gexp, add configure flags for FLAC and Wayland
support.
[inputs]: Remove libx11, libxext, and sdl; add flac and sdl2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-04-25 10:25:55 +01:00
Lars-Dominik Braun 54771a5b6a
gnu: python-anyio: Upgrade to 3.6.2. 
* gnu/packages/python-xyz.scm (python-anyio): Upgrade to 3.6.2.
 2023-04-25 11:08:32 +02:00
Lars-Dominik Braun e619750d00
Revert "gnu: python-pytest-trio: Update to 0.8.0." 
Not compatible with python-trio 0.8.

This reverts commit 27a4bfbd07.
 2023-04-25 11:08:30 +02:00
Lars-Dominik Braun 27e1451891
gnu: python-trio: Downgrade to 0.21. 
Version 0.22 deprecates MultiError, which trips up testsuites of
dependents. python-anyio for instance is explicitly not compatible with >=
0.22, so stick to an older release.

* gnu/packages/python-xyz.scm (python-trio): Downgrade to 0.21.
[arguments]: Disable failing test.
 2023-04-25 11:08:29 +02:00
Pierre Neidhardt ffb7ea6b63
gnu: sbcl-serapeum: Update to 20230423. 
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230423.
 2023-04-25 10:44:16 +02:00
Pierre Neidhardt 2ebe270927
gnu: sbcl-njson: Update to 1.0.0. 
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.0.0.
 2023-04-25 10:37:13 +02:00
Efraim Flashner 08c63aac53
gnu: slimevolley: Build with gcc-7. 
* gnu/packages/games.scm (slimevolley)[native-inputs]: Add gcc-7.
 2023-04-25 10:32:46 +03:00
Ricardo Wurmus 8495069bed
gnu: scribus: Fix build with latest poppler. 
* gnu/packages/patches/scribus-1.5.8-poppler-22.03.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.04.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.09.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-1.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/scribus.scm (scribus)[source]: Add patches.
[arguments]: Enable WANT_CPP17 option.
 2023-04-25 06:17:16 +02:00
Maxim Cournoyer 7fc2c442c8
gnu: gnucash: Update help installation prefix. 
The help installation prefix was changed upstream to match the XDG 'help-spec'
specification (see:
https://www.freedesktop.org/wiki/Specifications/help-spec/).

* gnu/packages/gnucash.scm (gnucash) [arguments]: Adjust install-docs phase.
 2023-04-24 23:35:47 -04:00
Maxim Cournoyer 971f00f237
gnu: python-tlsh: Fix build. 
* gnu/packages/python-xyz.scm (python-tlsh) [build-system]: Switch to
python-build-system.
[arguments]: Remove #:out-of-source.  Remove install phase override.  Add a
configure, chdir and adjust the check phase override.
[inputs]: Delete field.
[native-inputs]: New field.
 2023-04-24 21:31:56 -04:00
Maxim Cournoyer c9f82d57eb
gnu: sicp: Fix build. 
* gnu/packages/scheme.scm (sicp) [build-system]: Use copy-build-system.
[native-inputs]: Remove source input.
[arguments]: Remove #:modules and #:builder arguments.  Add #:install-plan and
 #:phases arguments.  Patch out obsolete call.
 2023-04-24 20:58:37 -04:00
Maxim Cournoyer 941adac603
gnu: python-pdbpp: Update to 0.10.3-0.e1c2e34. 
* gnu/packages/python-xyz.scm (python-pdbpp): Update to 0.10.3-0.e1c2e34.
[arguments]: Add pretend-version phase.
 2023-04-24 20:19:23 -04:00
Maxim Cournoyer 381da6260f
gnu: docker-compose: Use python-jsonschema-3 to fix build. 
* gnu/packages/docker.scm (docker-compose) [inputs]: Replace python-jsonschema
with python-jsonschema-3.
 2023-04-24 20:02:26 -04:00
Maxim Cournoyer 6378c9bb68
gnu: Add python-jsonschema-3. 
* gnu/packages/python-xyz.scm (python-jsonschema-3): New variable.
 2023-04-24 20:01:02 -04:00
Mekeor Melire 960647f016
gnu: emacs-password-store: Update to 2.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-password-store): Update to 2.3.0.
[propagated-inputs]: Remove emacs-auth-source-pass.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 01:17:24 +02:00
Nicolas Goaziou 7decb4c394
gnu: Add deal. 
* gnu/packages/games.scm (deal): New variable.
 2023-04-25 01:13:37 +02:00
Nicolas Goaziou 2ad1a3731f
gnu: lagrange: Update to 1.15.8. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.8.
 2023-04-25 01:13:37 +02:00
Nicolas Goaziou 1d3bba01ea
gnu: fet: Update to 6.9.0. 
* gnu/packages/education.scm (fet): Update to 6.9.0.
 2023-04-25 01:13:37 +02:00
Nicolas Goaziou 83167bc131
gnu: giac: Update to 1.9.0-45. 
* gnu/packages/algebra.scm (giac): Update to 1.9.0-45.
 2023-04-25 01:13:36 +02:00
jgart e1c1090a0a
gnu: purescript: Update to 0.15.8. 
* gnu/packages/purescript.scm (purescript): Update to 0.15.8.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 01:13:36 +02:00
Yovan Naumovski 621dad1a37
gnu: audacious: Update to 4.3. 
* gnu/packages/music.scm (audacious): Update to 4.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 01:13:36 +02:00
Dominik Delgado Steuter 14970395cc
gnu: Add python-gtts. 
* gnu/packages/python-xyz.scm (python-gtts): New variable.

Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 01:13:35 +02:00
kiasoc5 69e9349adc
gnu: recoll: Update to 1.34.0. 
* gnu/packages/search.scm (recoll): Update to 1.34.0.
[arguments]: Add --enable-recollq configure flag.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-25 01:13:35 +02:00