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Author SHA1 Message Date
Nicolas Goaziou e645194d80
gnu: emacs-envrc: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-envrc): Update to 0.4.
[propagated-inputs]: Add emacs-inheritenv.
 2021-08-26 10:25:28 +02:00
Nicolas Goaziou 29b3c0898f
gnu: Add emacs-inheritenv. 
* gnu/packages/emacs-xyz.scm (emacs-inheritenv): New variable.
 2021-08-26 10:25:15 +02:00
Nicolas Goaziou 20ca345899
gnu: emacs-ebdb: Update to 0.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.2.
 2021-08-26 10:13:45 +02:00
Andrew Whatson 26878cb3d8
gnu: osinfo-db: Update to 20210809. 
Fixes failures when attempting to download some images in gnome-boxes.

* gnu/packages/virtualization.scm (osinfo-db): Update to 20210809.
 2021-08-25 22:00:08 +02:00
Simon South 49339d2e68
gnu: knot-resolver: Update to 5.4.1. 
* gnu/packages/dns.scm (knot-resolver): Update to 5.4.1.
 2021-08-25 21:54:47 +02:00
Marius Bakke 08660f7c88
gnu: ungoogled-chromium: Update to 92.0.4515.159-0.8164c91. 
* gnu/packages/chromium.scm (%chromium-version): Set to 92.0.4515.159.
(%ungoogled-revision): Set to 92.0.4515.159-1-8-g8164c91.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2021-08-25 21:10:23 +02:00
Ricardo Wurmus 2f16659b40
gnu: Add r-ballgown. 
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
 2021-08-25 12:30:33 +02:00
Ricardo Wurmus f66759e0b2
gnu: Add ivar. 
* gnu/packages/bioinformatics.scm (ivar): New variable.
 2021-08-25 11:22:02 +02:00
Leo Famulari ae3e6ba506
gnu: atop: Update to 2.6.0. 
* gnu/packages/admin.scm (atop): Update to 2.6.0.
 2021-07-27 12:34:57 -04:00
Efraim Flashner 5422920b9e
gnu: openssl: Update replacement to 1.1.1l [security fixes]. 
* gnu/packages/tls.scm (openssl)[replacement]: Replace with 1.1.1l.
(openssl-1.1.1k): Remove variable.
(openssl-1.1.1l): Add variable.
 2021-08-24 22:36:39 +03:00
Ricardo Wurmus 68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus b2316605e2
gnu: r-scuttle: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 2897ad3178
gnu: r-beachmat: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus da7e7c9de8
gnu: r-biocset: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 0022f40462
gnu: r-clusterprofiler: Update to 4.0.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 5543456ae9
gnu: r-dose: Update to 3.18.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 1c23b99a3c
gnu: r-batchelor: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 82d6774757
gnu: r-ggtree: Update to 3.0.3. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus e4ad91eb3e
gnu: r-treeio: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 917f0def66
gnu: r-matrixgenerics: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 33fedd371a
gnu: r-diffbind: Update to 3.2.5. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 1920e567a7
gnu: r-rtracklayer: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 495c50c68d
gnu: r-limma: Update to 3.48.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 8df84bedf7
gnu: r-ensembldb: Update to 2.16.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus e46cf457bb
gnu: r-biostrings: Update to 2.60.2. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 227579e84a
gnu: r-biomart: Update to 2.48.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 2a775745d7
gnu: r-xml: Update to 3.99-0.7. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.7.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 871c81d0e6
gnu: r-rsqlite: Update to 2.2.8. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.8.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus e626540d41
gnu: r-rmarkdown: Update to 2.10. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.10.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 5b7813fd09
gnu: r-readr: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.1.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus ccdcb67353
gnu: r-r6: Update to 2.5.1. 
* gnu/packages/statistics.scm (r-r6): Update to 2.5.1.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 54b95b640d
gnu: r-survival: Update to 3.2-12. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-12.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 4f5328854f
gnu: r-keras: Update to 2.6.0. 
* gnu/packages/cran.scm (r-keras): Update to 2.6.0.
[propagated-inputs]: Add r-ellipsis and r-glue.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 33317ba722
gnu: r-tensorflow: Update to 2.6.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.6.0.
[propagated-inputs]: Remove r-jsonlite; add r-tfautograph.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus ed7d8e74e4
gnu: r-opencpu: Update to 2.2.5. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.5.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 224cb006f6
gnu: r-vroom: Update to 1.5.4. 
* gnu/packages/cran.scm (r-vroom): Update to 1.5.4.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 18a887b767
gnu: r-textplot: Update to 0.2.0. 
* gnu/packages/cran.scm (r-textplot): Update to 0.2.0.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 36a506586b
gnu: r-rjsonio: Update to 1.3-1.5. 
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.5.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 5f95575b84
gnu: r-english: Update to 1.2-6. 
* gnu/packages/cran.scm (r-english): Update to 1.2-6.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 1df8915a03
gnu: r-mlr3learners: Update to 0.5.0. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.0.
[propagated-inputs]: Add r-checkmate.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus f6e76ab262
gnu: r-mlr3: Update to 0.12.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.12.0.
[propagated-inputs]: Remove r-digest; add r-future.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 7dae9355fd
gnu: r-seurat: Update to 4.0.4. 
* gnu/packages/cran.scm (r-seurat): Update to 4.0.4.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 0887bff472
gnu: r-infer: Update to 1.0.0. 
* gnu/packages/cran.scm (r-infer): Update to 1.0.0.
[propagated-inputs]: Add r-broom, r-generics, r-patchwork, and r-tidyr.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus 59bc5db72e
gnu: r-scatterpie: Update to 0.1.7. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.7.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus d8cd4468e4
gnu: r-brms: Update to 2.16.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.16.0.
[propagated-inputs]: Add r-posterior.
 2021-08-24 12:28:11 +02:00