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Author SHA1 Message Date
Maxim Cournoyer cc9a77cd39
import: pypi: Deduplicate requirements. 
* guix/import/pypi.scm (parse-requires.txt): Remove potential duplicates.
 2019-07-02 10:07:59 +09:00
Maxim Cournoyer 803fb336d6
import: pypi: Improve parsing of requirement specifications. 
The previous solution was fragile and could leave unwanted characters in a
requirement name, such as '[' or ']'.

Partially fixes <https://bugs.gnu.org/33047>.

* guix/import/pypi.scm (use-modules): Export SPECIFICATION->REQUIREMENT-NAME
(%requirement-name-regexp): New variable.
(clean-requirement): Rename to...
(specification->requirement-name): this, which now uses
%requirement-name-regexp to select the requirement name from the requirement
specification.
(parse-requires.txt): Adapt.
 2019-07-02 10:07:59 +09:00
Maxim Cournoyer c4797121be
import: pypi: Do not parse optional requirements from source. 
* guix/import/pypi.scm: Export PARSE-REQUIRES.TXT.
(clean-requirement): Move procedure to the top level.
(guess-requirements): Move the READ-REQUIREMENTS procedure to the top level,
and rename it to PARSE-REQUIRES.TXT.  Move the CLEAN-REQUIREMENT procedure to
the top level.  Move the COMMENT? functions inside the PARSE-REQUIRES.TXT
procedure.
(parse-requires.txt): Add a SECTION-HEADER? predicate, and use it to prevent
parsing optional requirements.

* tests/pypi.scm (test-requires-with-sections): New variable.
("parse-requires.txt, with sections"): New test.
 2019-07-02 10:07:59 +09:00
Maxim Cournoyer a853acebe1
tests: pypi: Mute the output of tar. 
The output of tar when creating archives for the purpose of tests is not
useful, so we mute it.

* tests/pypi.scm ("pypi->guix-package"): Mute the output of tar.
("pypi->guix-package, wheels"): Likewise.
 2019-07-02 10:07:59 +09:00
Maxim Cournoyer 01589acc5e
import: pypi: Do not consider requirements.txt files. 
PyPI packages are mandated to have a setup.py file, which contains a listing
of the required dependencies.  The setuptools/distutils machinery embed
metadata in the archives they produce, which contains this information. There
is no need nor gain to collect the requirements from a "requirements.txt"
file, as it is not the true record of dependencies for PyPI packages and may
contain extraneous requirements or not exist at all.

* guix/import/pypi.scm (guess-requirements): Update comment.
[guess-requirements-from-source]: Do not attempt to parse the file
requirements.txt.  Streamline logic.
* tests/pypi.scm (test-requires.txt): Rename from test-requirements, to hint
at the file being tested.
("pypi->guix-package"): Adapt so that the fake package contains a requires.txt
file rather than a requirements.txt file.
("pypi->guix-package, wheels"): Likewise.
 2019-07-02 10:07:59 +09:00
Nicolas Goaziou 0f0651295e
gnu: silkaj: Update to 0.7.2. 
* gnu/packages/finance.scm (silkaj): Update to 0.7.2.
 2019-07-02 00:45:05 +02:00
Nicolas Goaziou 7242d5792b
gnu: giac: Update to 1.5.0-61. 
* gnu/packages/algebra.scm (giac): Update to 1.5.0-61.
 2019-07-02 00:38:36 +02:00
Nicolas Goaziou 2868804de6
gnu: python-duniterpy: Update to 0.54.3. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.54.3.
 2019-07-02 00:13:08 +02:00
Ricardo Wurmus cea5db1b84
etc: Do not recommend use of SKS key servers. 
* etc/guix-install.sh: Recommend downloading the GPG key from Savannah.
 2019-07-01 23:32:08 +02:00
Ludovic Courtès 78c88baad5
gnu: guile: Add 2.2.6. 
* gnu/packages/guile.scm (guile-2.2.5): Rename to...
(guile-2.2.6): ... this, and update to 2.2.6.
 2019-07-01 12:29:34 +02:00
Danny Milosavljevic 037bef7db4
gnu: behave: Fix build. 
* gnu/packages/check.scm (behave)[propagated-inputs]: Add
python-importlib-metadata.
 2019-07-01 12:08:08 +02:00
Marius Bakke a3d1a3487a
gnu: gtksourceviewmm: Build against gtksourceview@3. 
* gnu/packages/gtk.scm (gtksourceviewmm)[propagated-inputs]: Change
GTKSOURCEVIEW to GTKSOURCEVIEW-3.
 2019-06-30 20:14:58 +02:00
Ivan Petkov 022288ba53
guix: import: crate: fix redundant inputs list nesting 
* guix/import/crate.scm (maybe-cargo-inputs): Remove one level of lists.
* guix/import/crate.scm (maybe-cargo-development-inputs): Same.
* tests/crate.scm: (crate->guix-package)[package]<#:arguments>: Remove
one level of list nesting.
 2019-06-30 09:01:27 -07:00
Marius Bakke 5dd0269244
gnu: miniupnpc: Update to 2.1.20190625. 
* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190625.
 2019-06-30 14:11:02 +02:00
Marius Bakke 1307aa4427
gnu: mbedtls-apache: Update to 2.16.2. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.2.
 2019-06-30 14:11:01 +02:00
Marius Bakke ff68ddb032
gnu: ungoogled-chromium: Build against ICU 64. 
* gnu/packages/icu4c.scm (icu4c-64): New public variable.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change ICU4C to ICU4C-64.
 2019-06-30 14:11:00 +02:00
Marius Bakke 8e92d5465f
gnu: nginx: Update to 1.17.1. 
* gnu/packages/web.scm (nginx): Update to 1.17.1.
 2019-06-29 23:17:13 +02:00
Marius Bakke 55d1d9eb2f
gnu: gstreamer: Fix buffer offset problem. 
* gnu/packages/patches/gstreamer-buffer-reset-offset.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gstreamer)[source](patches): New field.
[arguments]: Do not disable any tests.
 2019-06-29 23:17:13 +02:00
Efraim Flashner bdb51ed6d1
gnu: stow: Update license information. 
* gnu/packages/package-management.scm (stow)[license]: Update to gpl3+.
 2019-06-29 21:18:50 +03:00
Tobias Geerinckx-Rice 87a90486ca
download: Remove hydra from content-addressed URL list 
* guix/build/download-nar.scm (urls-for-item): Remove
mirror.hydra.gnu.org.
* guix/download.scm (%content-addressed-mirrors): Likewise.
 2019-06-29 14:31:23 +02:00
Tobias Geerinckx-Rice 3a8bfebed9
etc: Remove hydra.gnu.org.pub key. 
* etc/substitutes/hydra.gnu.org.pub: Delete file.
* guix/self.scm (miscellaneous-files): Don't install it.
* Makefile.am (dist_pkgdata_DATA): Remove it.
* gnu/services/base.scm (%default-authorized-guix-keys): Likewise.
(hydra-key-authorization): Rename to…
(substitute-key-authorization): …this.  Adjust only call site.
 2019-06-29 14:27:22 +02:00
Tobias Geerinckx-Rice 70d6ec3e4f
doc: Correct the software behind ci.guix.gnu.org. 
* doc/guix.texi (Invoking guix publish): It runs Cuirass.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice 44b5f28a77
doc: Remove references to hydra.gnu.org. 
* doc/contributing.texi (Packaging Guidelines, Submitting Patches):
Replace hydra URL with @value{SUBSTITUTE-SERVER}.
* doc/guix.texi (Official Substitute Server): Remove ‘hydra’ @cindex.
(Substitute Server Authorization): Remove note about hydra.gnu.org.pub.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice 414c4de15d
guix-install.sh: Don't authorise hydra.gnu.org. 
* etc/guix-install.sh (sys_authorize_build_farms): Authorise only
ci.guix.gnu.org and make all references to it singular.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice a3efe269b5
gnu: flashrom: Update to 1.1. 
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.1.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice ad9baf38ce
gnu: di: Update to 4.47.1. 
* gnu/packages/admin.scm (di): Update to 4.47.1.
 2019-06-29 06:28:50 +02:00
Eric Bavier 30833b1397
gnu: stow: Update to 2.3.0. 
* gnu/packages/package-management.scm (stow): Update to 2.3.0.
[propagated-inputs]: New field.
 2019-06-28 22:49:21 -05:00
Eric Bavier d1555f34c0
gnu: Add Perl Clone::Choose. 
* gnu/packages/perl.scm (perl-clone-choose): New variable.
 2019-06-28 22:44:59 -05:00
Ivan Petkov f5de2b9a3e
gnu: rust: use llvm@8 
* gnu/packages/llvm.scm (llvm): Rename to...
(llvm-8): ...this.
(llvm): New variable.
* gnu/packages/rust.scm (rust)[inputs]: Use llvm-8
 2019-06-28 18:31:51 -07:00
Ivan Petkov f676b2a45f
gnu: rust: downgrade older versions to llvm@6 
* gnu/packages/rust.scm: (rust-1.30): Remove llvm override.
 2019-06-28 18:31:51 -07:00
Ivan Petkov f309420b2d
gnu: rust: remove debug-info patch thanks to newer gdb version 
* gnu/local.mk: (dist_patch_DATA): Delete
%D%/packages/patches/rust-1.30-gdb-llvm.patch
* gnu/packages/rust.scm: (rust-1.30): Delete patch overrides.
(rust-1.31): Delete patch overrides.
 2019-06-28 18:31:47 -07:00
Ricardo Wurmus 3d0c9ff83e
gnu: r-quantreg: Update to 5.41. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.41.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 73a29d39b3
gnu: r-fpc: Update to 2.2-3. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-3.
[propagated-inputs]: Remove r-mvtnorm.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 666a5a649c
gnu: r-mclust: Update to 5.4.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.4.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus fad641716e
gnu: r-mvtnorm: Update to 1.0-11. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-11.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 30f7acdb6b
gnu: r-segmented: Update to 1.0-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.0-0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 5eddf1e291
gnu: r-plotrix: Update to 3.7-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-6.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 0b17f1d1dd
gnu: r-dbplyr: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.2.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus ef558bcfc5
gnu: r-rlang: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 45ad3fa9e1
gnu: r-gdtools: Update to 0.1.9. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 2c4b38002e
gnu: r-cluster: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus d42fb7d293
gnu: r-future-apply: Update to 1.3.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 36ff60f539
gnu: r-bootstrap: Update to 2019.6. 
* gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 93e72161ae
gnu: r-rnifti: Update to 0.11.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 9f84c9e843
gnu: r-rgl: Update to 0.100.24. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus da4754a3b1
gnu: r-remotes: Update to 2.1.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus a634a76a06
gnu: r-bayestestr: Update to 0.2.2. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 992e03d209
gnu: r-emmeans: Update to 1.3.5.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 56ab7acb96
gnu: r-ggstance: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus c46a16407b
gnu: r-flextable: Update to 0.5.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
 2019-06-29 01:34:44 +02:00