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Author SHA1 Message Date
Leo Famulari c8e1d21fe4
gnu: linux-libre 5.4: Update to 5.4.214. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.214.
(linux-libre-5.4-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari ceec1c7f83
gnu: linux-libre 5.10: Update to 5.10.144. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.144.
(linux-libre-5.10-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari 4af8cfad82
gnu: linux-libre 5.15: Update to 5.15.69. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.69.
(linux-libre-5.15-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari 9b5060f7bf
gnu: linux-libre: Update to 5.19.10. 
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.10.
(linux-libre-5.19-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
arkhan 89fed46752
gnu: xonsh: Update to 0.13.3. 
* gnu/packages/shells.scm (xonsh): Update to 0.13.3.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 10:02:38 +08:00
Rostislav Svoboda a3fa6b1e6a
gnu: clojure-tools: Update to 1.11.1.1165. 
* gnu/packages/clojure.scm (clojure-tools): Update to 1.11.1.1165.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:53:07 +08:00
Michael Rohleder d78050c01d
gnu: xfce4-places-plugin: Update to 1.8.2. 
* gnu/packages/xfce.scm (xfce4-places-plugin): Update to 1.8.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:44:40 +08:00
Michael Rohleder a29cd4d911
gnu: xfce4-datetime-plugin: Update to 0.8.2. 
* gnu/packages/xfce.scm (xfce4-datetime-plugin): Update to 0.8.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:43:32 +08:00
Michael Rohleder 83bdd835a9
gnu: xfce4-pulseaudio-plugin: Update to 0.4.5. 
* gnu/packages/xfce.scm (xfce4-pulseaudio-plugin): Update to 0.4.5.
[arguments]: Remove unnecessary phase 'augment-cflags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:41:14 +08:00
Ricardo Wurmus 1a1ff7ed8f
gnu: python-cooler: Skip broken test. 
* gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add another
patch for tests/test_util.py.
 2022-09-21 22:19:33 +02:00
Ricardo Wurmus cd5bbb9b42
gnu: python-cooler: Do not use flake8. 
* gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add build phase
'do-not-use-flake8.
 2022-09-21 22:19:33 +02:00
Vagrant Cascadian 97e7195930
gnu: Add python-ephem. 
* gnu/packages/astronomy.scm (python-ephem): New Variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 22:07:27 +02:00
Vagrant Cascadian fff6407df3
gnu: Add python-suntime. 
* gnu/packages/astronomy.scm (python-suntime): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 22:05:07 +02:00
Andreas Enge 6885f22375
gnu: gp2c: Update to 0.0.13. 
* gnu/packages/algebra.scm (gp2c): Update to 0.0.13.
 2022-09-21 13:29:13 +02:00
Andreas Enge 2ae22cafe7
gnu: pari-gp: Update to 2.15.0. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.0. Modernize syntax.
 2022-09-21 13:29:13 +02:00
Hunter Jozwiak e883ea89c6
gnu: Add espeakup. 
* gnu/packages/accessibility.scm (espeakup): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 13:20:56 +02:00
Ricardo Wurmus d871080a41
gnu: Add r-chromunity. 
* gnu/packages/bioinformatics.scm (r-chromunity): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus a7f6392caa
gnu: Add r-skitools. 
* gnu/packages/bioinformatics.scm (r-skitools): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus af663c9e48
gnu: Add r-gchain. 
* gnu/packages/bioinformatics.scm (r-gchain): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus 6ad4d74aca
gnu: Add r-gtrack. 
* gnu/packages/bioinformatics.scm (r-gtrack): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus 29634a4ce3
gnu: Add r-bamutils. 
* gnu/packages/bioinformatics.scm (r-bamutils): New variable.
 2022-09-21 11:09:45 +02:00
Ricardo Wurmus 4bd64dde2b
gnu: Add r-gutils. 
* gnu/packages/bioinformatics.scm (r-gutils): New variable.
 2022-09-21 11:09:41 +02:00
Artyom V. Poptsov d4090c3027
gnu: maven-slf4j-provider: Fix style. 
* gnu/packages/maven.scm (maven-slf4j-provider): Fix style.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:59 +02:00
Artyom V. Poptsov 79897a3701
gnu: maven-slf4j-provider: Bugfix. 
* gnu/packages/maven.scm (maven-slf4j-provider): Bugfix: Don't use "tar" to
  extract "java-slf4j-simple-source" as it is already unpacked; recursively copy
  the source instead.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:54 +02:00
Hilton Chain 344405475a
gnu: telegram-desktop: Use API ID from Snap builds. 
* gnu/packages/telegram.scm (telegram-desktop)[#:configure-flags]: Use API ID
from Telegram's official Snap builds.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain a7164abcd0
gnu: telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (%telegram-version)
(cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop)
(lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop)
(lib-lottie-for-telegram-desktop, lib-qr-for-telegram-desktop)
(lib-rlottie-for-telegram-desktop,lib-rpl-for-telegram-desktop)
(lib-spellcheck-for-telegram-desktop, lib-storage-for-telegram-desktop)
(lib-tl-for-telegram-desktop, lib-ui-for-telegram-desktop)
(lib-waylandshells-for-telegram-desktop, lib-webrtc-for-telegram-desktop)
(lib-webview-for-telegram-desktop, tgcalls-for-telegram-desktop): New variables.
(telegram-desktop)[arguments]: Convert to list of G-Expressions.
<#:phases>: Inline cmake-helpers-for-telegram-desktop,
codegen-for-telegram-desktop, lib-base-for-telegram-desktop,
lib-crl-for-telegram-desktop, lib-lottie-for-telegram-desktop,
lib-qr-for-telegram-desktop, lib-rlottie-for-telegram-desktop,
lib-rpl-for-telegram-desktop, lib-spellcheck-for-telegram-desktop,
lib-storage-for-telegram-desktop, lib-tl-for-telegram-desktop,
lib-ui-for-telegram-desktop, lib-waylandshells-for-telegram-desktop,
lib-webrtc-for-telegram-desktop, lib-webview-for-telegram-desktop,
and tgcalls-for-telegram-desktop.
[native-inputs]: Remove cmake-helpers.  Drop labels.
[inputs]: Remove codegen-source, lib-base-source, lib-crl-source,
lib-lottie-source, lib-qr-source, lib-rlottie-source, lib-rpl-source,
lib-spellcheck-source, lib-storage-source, lib-tl-source, lib-ui-source,
lib-waylandshells-source, lib-webrtc-source, lib-webview-source and
tgcalls-source.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain e76c93a56b
gnu: webrtc-for-telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (libvpx-for-telegram-desktop)
(libyuv-for-telegram-desktop): New variables.
(webrtc-for-telegram-desktop)[arguments]: Convert to list of G-Expressions.
Inline libvpx-for-telegram-desktop and libyuv-for-telegram-desktop.
[inputs]: Remove libvpx and libyuv.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain 425e4f6fcd
gnu: telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Hilton Chain 5ca7ec92f5
gnu: webrtc-for-telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Sughosha cb2d5063a0
gnu: Add gnome-console. 
* gnu/packages/gnome.scm (gnome-console): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Sughosha d6a16a1dc4
gnu: Add gnome-text-editor. 
* gnu/packages/gnome.scm (gnome-text-editor): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Ricardo Wurmus f256614891
gnu: guile-aiscm-next: Deprecate in favor of guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): Define as a deprecated
name for guile-aiscm.
 2022-09-20 23:57:18 +02:00
Ricardo Wurmus 0d7f2469b5
gnu: guile-aiscm: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (guile-aiscm): Update to 0.24.2.
[arguments]: Add configure flags for OpenCV modules; add build phase
'find-clearsilver; adjust phase 'use-llvm-config; add phase
'disable-broken-test.
[inputs]: Add clearsilver, libgc, opencv, and tensorflow; replace ffmpeg with
ffmpeg-4.
[native-inputs]: Add protobuf-c; replace clang-13 and llvm-13 with clang-11
and llvm-11, respectively.
 2022-09-20 23:57:18 +02:00
Nicolas Goaziou 97bbb9d603
gnu: emacs-rustic: Update to 3.4. 
* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 3.4.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou 81cda4134a
gnu: emacs-repl-toggle: Update to 0.7.2. 
* gnu/packages/emacs-xyz.scm (emacs-repl-toggle): Update to 0.7.2.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou 62911821a1
gnu: emacs-boxquote: Update to 2.3. 
* gnu/packages/emacs-xyz.scm (emacs-boxquote): Update to 2.3.
 2022-09-20 21:22:06 +02:00
Morgan Smith 90a73f6569
gnu: emacs-osm: Update to 0.8. 
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.8.
[arguments]<#:phases>: Add MAKEINFO phase.
[native-inputs]: Add TEXINFO.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
pinoaffe 7c9d8b2e96
gnu: Add emacs-pdfgrep. 
* gnu/packages/emacs-xyz.scm (emacs-pdfgrep): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
Nicolas Goaziou 84dae49340
gnu: emacs-setup: Update to 1.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-setup): Update to 1.3.2.
 2022-09-20 21:22:05 +02:00
Nicolas Goaziou 830405eb48
gnu: emacs-taxy: Update to 0.10.1. 
* gnu/packages/emacs-xyz.scm (emacs-taxy): Update to 0.10.1.
 2022-09-20 21:22:05 +02:00
Ludovic Courtès 6abdcef4a6
linux-container: 'container-excursion*' marks its FDs as FD_CLOEXEC. 
Fixes <https://issues.guix.gnu.org/57827>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

Fixes a regression introduced with the Shepherd 0.9.2 upgrade in
1ba0e38267, whereby IN and OUT would no
longer be closed when 'fork+exec-command/container' would call
'exec-command*' as part of the THUNK passed to 'container-excursion*'.

This is because the Shepherd 0.9.2 assumes file descriptors are properly
marked as O_CLOEXEC and, consequently, 'exec-command' no longer run the
close(2) loop prior to 'exec'.

* gnu/build/linux-container.scm (container-excursion*): Add calls to
'fcntl'.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès 76c58ed59c
home: import: Use (guix read-print) to render the config file. 
* guix/scripts/home/import.scm (manifest+configuration-files->code):
Insert calls to 'comment' and 'vertical-space'.
(import-manifest): Use 'pretty-print-with-comments/splice' instead of a
loop on 'pretty-print'.
* tests/home-import.scm (remove-recursively): New procedure.
(eval-test-with-home-environment): Use it.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès d0a1e48944
read-print: Add rule for 'home-bash-configuration'. 
* guix/read-print.scm (%newline-forms): Add 'home-bash-configuration'.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès 7a698da0d0
read-print: Correctly support multiple same-named newline forms. 
Previously (home-environment (services ...)) would not be considered a
"newline form".  This fixes it.

* guix/read-print.scm (newline-form?): Use 'vhash-foldq*' instead of
'vhash-assq' and iterate over candidates.
* tests/read-print.scm: Add test.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès 818220f1cc
weather: Actually show the weather. 
* guix/scripts/weather.scm (report-server-coverage): Show a weather icon.
 2022-09-20 19:24:31 +02:00
Ricardo Wurmus 8084e3bdb3
gnu: python-pyvcf: Update to 0.6.8-0.476169c. 
* gnu/packages/bioinformatics.scm (python-pyvcf): Update to 0.6.8-0.476169c.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus 9ed635cd9a
gnu: python-pyvcf: Use older setuptools. 
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Replace
python-setuptools with python-setuptools-for-tensorflow.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus 87a9f03b32
gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3. 
* gnu/packages/cran.scm (r-mlr3ordinal): Update to 0.1.0-9000-1.736e3a3.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus ec92bcaadd
import/cran: description->package: Use COND and computed booleans. 
* guix/import/cran.scm (description->package): Use COND with previously
computed booleans instead of using CASE on REPOSITORY.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 8c620a6036
import/cran: download: Accept optional REF argument. 
* guix/import/cran.scm (download): Accept REF argument for git downloads.
 2022-09-20 17:02:33 +02:00