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98860 commits

Author SHA1 Message Date
Paul A. Patience c2fe78db73
gnu: txr: Update to 278.
* gnu/packages/lisp.scm (txr): Update to 278.
[source]: Use 'https' in url.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 12:06:52 +03:00
André A. Gomes ff181ed7a1
gnu: sbcl-quri: Update to 0.6.0.
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.6.0.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2022-07-06 11:05:36 +02:00
Philippe SWARTVAGHER 111bdcff48
gnu: hwloc: Update to 2.8.0
* gnu/packages/mpi.scm (hwloc): Update to 2.8.0

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 11:49:31 +03:00
Juliana Sims 8bea879715
gnu: qpwgraph: Add qpwgraph.
* gnu/packages/audio.scm (qpwgraph): Add qpwgraph.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 11:15:36 +03:00
Leo Famulari 3eeeaa26aa
gnu: Syncthing: Update to 1.20.3.
* gnu/packages/syncthing.scm (syncthing): Update to 1.20.3.
2022-07-05 23:09:30 -04:00
Leo Famulari fca8991850
gnu: Go: Update to 1.17.11.
* gnu/packages/golang.scm (go-1.17): Update to 1.17.11.
2022-07-05 23:09:27 -04:00
Leo Famulari c72c3e851b
gnu: WebKit: Update to 2.36.4 [security fixes].
Fixes CVE-2022-22677 and CVE-2022-26710.

* gnu/packages/webkit.scm (%webkit-version, webkitgtk, wpewebkit):
  Update to 2.36.4.
2022-07-05 18:46:24 -04:00
Ludovic Courtès 43cf8861b8
gnu: liblantern: Update to 0.8.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.0.
2022-07-05 16:56:05 +02:00
Ludovic Courtès 20f55375dc
gnu: python-pytorch: Update to 1.11.0.
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0.
[source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc"
substitution.
[arguments]: Add 'remove-caffe2-onnx-scripts' phase.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
2022-07-05 16:56:04 +02:00
Ludovic Courtès b211824f0a
gnu: onnx: Update to 1.12.0.
* gnu/packages/machine-learning.scm (onnx): Update to 1.12.0.
2022-07-05 16:56:04 +02:00
Ludovic Courtès ef97576972
doc: Document the 'validate-runpath' phase.
* doc/guix.texi (Build Systems): Replace paragraph about RUNPATH
validation with a cross-reference.
(Build Phases): Add 'validate-runpath' phase, with the paragraph taken
above.
2022-07-05 16:56:04 +02:00
Nicolas Goaziou f14895d0c4
gnu: emacs-org-ql: Sort inputs alphabetically.
* gnu/packages/emacs-xyz.scm (emacs-org-ql)[propagated-inputs]: Sort inputs
alphabetically.
2022-07-05 14:18:25 +02:00
Nicolas Goaziou 36253cb636
gnu: emacs-org-ql: Update to 0.6.2.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.6.2.
2022-07-05 14:16:45 +02:00
Ricardo Wurmus 801be314d2
gnu: r-sandwich: Delete more generated vignette files.
* gnu/packages/cran.scm (r-sandwich)[source]: Delete more files.
2022-07-05 13:47:12 +02:00
Lars-Dominik Braun 06493e7388
gnu: guix: Update to 1.3.0-28.c23e0aa.
Fixes a problem with the binary installer, whose guix command does not
understand manifest format 4 yet.

* gnu/packages/package-management.scm (guix): Update to 1.3.0-28.c23e0aa.
2022-07-05 11:23:21 +02:00
Lars-Dominik Braun c23e0aa65d
maint: Disable telephony service tests.
Temporarily, so we can bump the guix package.

* Makefile.am (SCM_TESTS): Remove tests/services/telephony.scm.
2022-07-05 11:04:18 +02:00
Nicolas Goaziou 02ca41d901
gnu: emacs-parsebib: Update to 4.1.
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 4.1.

Fixes bug#56346.
2022-07-05 10:09:22 +02:00
Nicolas Goaziou 85bc10fdab
gnu: emacs-citar: Update to 0.9.6.
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 0.9.6.
[propagated-inputs]: Add EMACS-CITAR.
2022-07-05 09:52:51 +02:00
Marius Bakke c2ce62b6db
gnu: python-django@3.2: Update to 3.2.14 [fixes CVE-2022-34265].
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.14.
2022-07-05 01:56:51 +02:00
Marius Bakke 87fcfb8365
gnu: Django: Update to 4.0.6 [fixes CVE-2022-34265].
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.6.
2022-07-05 01:56:50 +02:00
Ludovic Courtès 8d9291bd2c
style: For 'let' and similar forms, emit one binding per line.
Previously, 'let' bindings could be rendered like this:

  (let ((x 1) (y 2)
        (z 3))
    ...)

With this change, each bindings goes in its own line.

Partly fixes <https://issues.guix.gnu.org/56297>.
Reported by Maxime Devos <maximedevos@telenet.be>.

* guix/scripts/style.scm (pretty-print-with-comments)[list-of-lists?]:
New procedure.
Use it.
* tests/style.scm: Add tests with 'let' and 'substitute-keyword-arguments'.
2022-07-04 23:38:38 +02:00
Philip McGrath 3348e485b7
etc/guix-install.sh: Check for profile from 'guix home'.
If "$HOME/.guix-home/profile" exists, use it for GUIX_PROFILE instead of
"$HOME/.guix-profile".

* etc/guix-install.sh (sys_create_init_profile): Check for 'guix home'
profile.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 23:38:38 +02:00
Philip McGrath 23aafc800c
etc/guix-install.sh: Initialize XDG base directories.
The default values from the XDG base directory specification make little
sense for Guix System, and some scripts in Guix assume that they are not
"empty or unset": for example, see <https://issues.guix.gnu.org/56050>.
On foreign distros, however, omitting the default values is likely to
break software from the distro, perhaps even preventing the desktop
environment from starting. To smooth over the difference, use the
system-wide configuration to ensure the environment variables are always
explicitly set on foreign distros.

* etc/guix-install.sh (sys_create_init_profile): Explicitly initialize
XDG base directory variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 23:38:37 +02:00
Hartmut Goebel a3d86b341d
style: Add option '--list-stylings'.
* guix/scripts/style.scm (show-stylings): New procedure.
  (%options, show-help): Add "--list-stylings".
* doc/guix.texi (Invoking guix style): Document "-l".
2022-07-04 16:13:13 +02:00
Hartmut Goebel fdcd0133b2
gnu: Add trytond-stock-package-shipping-dpd.
* gnu/packages/tryton.scm (trytond-stock-package-shipping-dpd): New variable.
2022-07-04 16:10:53 +02:00
Hartmut Goebel c8f49e5c70
gnu: Add trytond-google-maps.
* gnu/packages/tryton.scm (trytond-google-maps): New variable.
2022-07-04 16:10:53 +02:00
Hartmut Goebel d0326574f8
gnu: Add trytond-gis.
* gnu/packages/tryton.scm (trytond-gis): New variable.
2022-07-04 16:10:52 +02:00
Hartmut Goebel bc6780ee9a
gnu: Add python-geomet.
* gnu/packages/python-xyz.scm (python-geomet): New variable.
2022-07-04 16:10:51 +02:00
Nicolas Goaziou 477e561a46
gnu: emacs-emms-print-metadata: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata)[arguments]: Use G-expressions.
2022-07-04 15:37:31 +02:00
Nicolas Goaziou 97be378dae
gnu: emacs-emms: Update to 11.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 11.
2022-07-04 15:36:17 +02:00
Nicolas Goaziou 44b832d719
gnu: emacs-rg: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-rg)[arguments]: Use G-expressions and MAKE-FILE-WRITABLE.
2022-07-04 15:33:15 +02:00
Nicolas Goaziou 30f8183b9a
gnu: emacs-rg: Update to 2.2.1.
* gnu/packages/emacs-xyz.scm (emacs-rg): Update to 2.2.1.
2022-07-04 15:32:34 +02:00
Nicolas Goaziou e5b3349128
gnu: fsearch: Update to 0.1.3.
* gnu/packages/search.scm (fsearch): Update to 0.1.3.
2022-07-04 15:31:08 +02:00
Nicolas Goaziou 942dcd30c4
gnu: manuskript: Update package style.
* gnu/packages/text-editors.scm (manuskript)[arguments]: Use
G-expressions. Remove trailing #T.
2022-07-04 15:28:07 +02:00
Nicolas Goaziou ba2d504939
gnu: manuskript: Update to 0.14.0.
* gnu/packages/text-editors.scm (manuskript): Update to 0.14.0.
2022-07-04 15:25:14 +02:00
Nicolas Goaziou c0f6287974
gnu: nauty: Update package style.
* gnu/packages/maths.scm (nauty)[arguments]: Use G-expressions. Remove
trailing #T.
2022-07-04 15:22:03 +02:00
Nicolas Goaziou c3a2d354e3
gnu: nauty: Update to 2.7r4.
* gnu/packages/maths.scm (nauty): Update to 2.7r4.
2022-07-04 15:19:11 +02:00
Nicolas Goaziou f5758b36da
gnu: tlpui: Use G-expressions.
* gnu/packages/linux.scm (tlpui)[arguments]: Use G-expressions.
2022-07-04 15:11:39 +02:00
Nicolas Goaziou 16c2372fe8
gnu: tlpui: Honor TESTS?.
* gnu/packages/linux.scm (tlpui)[arguments]<#:phases>: Honor TESTS? in CHECK
phase.
2022-07-04 15:08:36 +02:00
Nicolas Goaziou 56892af033
gnu: tlpui: Update to 1.5.0-1.
* gnu/packages/linux.scm (tlpui): Update to 1.5.0-1.
2022-07-04 15:07:54 +02:00
Pierre Neidhardt 741a5ec00a
gnu: emacs-sly-stepper: Update to 20220704.
* gnu/packages/emacs-xyz.scm (emacs-sly-stepper): Update to 20220704.
2022-07-04 14:52:24 +02:00
Ricardo Wurmus a0125732ef
gnu: Add r-sccustomize.
* gnu/packages/bioinformatics.scm (r-sccustomize): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus 602cf66c79
gnu: Add r-dittoseq.
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus e05f62bf6a
gnu: Add r-ggprism.
* gnu/packages/cran.scm (r-ggprism): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus cbfcff5961
gnu: Add r-ggrastr.
* gnu/packages/cran.scm (r-ggrastr): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 4aee04819e
gnu: Add r-janitor.
* gnu/packages/cran.scm (r-janitor): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 12d206901a
gnu: Add r-paletteer.
* gnu/packages/cran.scm (r-paletteer): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 9c58c87aa9
gnu: Add r-prismatic.
* gnu/packages/cran.scm (r-prismatic): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 738e4eea14
gnu: Add r-colorway.
* gnu/packages/statistics.scm (r-colorway): New variable.
2022-07-04 13:48:57 +02:00
Jean-Pierre De Jesus DIAZ 31e4eaf52c
gnu: vpnc: Add bsd-2 license.
* gnu/packages/vpn.scm (vpnc)[license]: Add bsd-2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00