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126887 commits

Author SHA1 Message Date
Ricardo Wurmus c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus b3f89195e9
gnu: r-gosemsim: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I039ed379e9fa3870bd40a68dbfd6446ca35dafc0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus aa61c81823
gnu: r-heatplus: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.10.0.

Change-Id: I753528f67b5b7e3640a6e59caac755fcd755b5c5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus c3d0f015cf
gnu: r-varianttools: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.44.0.

Change-Id: Ib9dc77f1ba4962d9cbb8cad7ebb8026d8e124ffa
2023-11-03 22:49:21 +01:00
Ricardo Wurmus db11b1bbe0
gnu: r-tradeseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.16.0.

Change-Id: I65377ca43aa3075f7ce401494f1a335b3302306d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 5c7985b3b7
gnu: r-ioniser: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.26.0.

Change-Id: I19866002eb8259be80d4f3541fd37020af802f39
2023-11-03 22:49:21 +01:00
Ricardo Wurmus f1c930495b
gnu: r-linnorm: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.26.0.

Change-Id: Ie39f7252178e41bcd103ea8a6c857992eeed7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 038df629a9
gnu: r-lumi: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.54.0.

Change-Id: I74cb1e60a1ba2e9c62b412eec51b71c9b19aa8c7
2023-11-03 22:49:21 +01:00
Ricardo Wurmus e55a61949e
gnu: r-lefser: Update to 1.11.5.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.11.5.

Change-Id: I30883461fef45b2e535175c8534276372e1ef9e4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus e6f93e58c9
gnu: r-methylumi: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.48.0.

Change-Id: Ie17336e7bbfe5b9c74beb3887596d2993adbfb4c
2023-11-03 22:49:21 +01:00
Ricardo Wurmus 8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 9d69d64b46
gnu: r-siggenes: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.76.0.

Change-Id: I89ebcf7df2771f8ab19bd74d93ba15b72e1a70a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 54a13eff99
gnu: r-illuminaio: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.44.0.

Change-Id: I8da181164ac8e9c98ecc892a7d1fe878cdced4f0
2023-11-03 22:49:20 +01:00
Ricardo Wurmus cb94125b4c
gnu: r-geoquery: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.70.0.

Change-Id: I9d58b9ed1ad004177a354c7c688ec431368373f8
2023-11-03 22:49:20 +01:00
Ricardo Wurmus dffab6110f
gnu: r-scone: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.26.0.

Change-Id: Iae18ed324d7925e647a664e1547fa0eeaedab6a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 61a2dc87d8
gnu: r-scdd: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.26.0.

Change-Id: I631b260c9a8069fc88140c2a0c9f700f1f321a1a
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 005c3a7ec9
gnu: r-noiseq: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.46.0.

Change-Id: Ie5e5043de7def381411ae1637ebc224f82818eee
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 444871c0f2
gnu: r-sangerseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.38.0.

Change-Id: I53de38940e7ce55f35de24e2f9b5dbf83fcc4f90
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1b63a91e57
gnu: r-monocle: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.0.

Change-Id: Ib0a52eae3545712f3b96e42addf2d9c647eb29f9
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00
Ricardo Wurmus c0ea127d3f
gnu: r-dnacopy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.76.0.

Change-Id: Iba9ff03065138d1fbd295b28d91c06f5596e2048
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 819eb5ca24
gnu: r-chipexoqual: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.26.0.

Change-Id: I1246ce25e9da6aed07d52683e0f8bec677c6a41e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 02ddd7963b
gnu: r-destiny: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.16.0.

Change-Id: I3c22657e57062e00b135e94c764db7f5fbce4a41
2023-11-03 22:49:20 +01:00
Ricardo Wurmus dd6e945cb4
gnu: r-biocsingular: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.18.0.

Change-Id: If1228bfbe2b4a8bd84de6c645356ea35ed632262
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1672a49c4e
gnu: r-metapod: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.0.

Change-Id: I6ae84bb0ab8e68833206b214046a0144f60ae3cb
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 8aeaa84e2a
gnu: r-ggtree: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.0.

Change-Id: Iec5a7eb16425f5c3dbe2d457a71e70c74eb1b159
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 74253229f1
gnu: r-treesummarizedexperiment: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.10.0.

Change-Id: I287f495062c808354edef562d6844d8bb43cfaef
2023-11-03 22:49:20 +01:00
Ricardo Wurmus a7cd80eaf1
gnu: r-treeio: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.26.0.
[propagated-inputs]: Remove r-cli.

Change-Id: I7776d679c5af2e622451204ea586c297d4287389
2023-11-03 22:49:20 +01:00
Ricardo Wurmus b8daed53af
gnu: r-scaledmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.10.0.

Change-Id: I50c8d29395648059e815c2e9ca2d3a07d17d2aba
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 69bd0f8752
gnu: r-biocneighbors: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.0.

Change-Id: I0e0dd9c4b2d1a4077176614814ef40a3f8c26e30
2023-11-03 22:49:19 +01:00