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126887 commits

Author SHA1 Message Date
Ricardo Wurmus baa4a2629e
gnu: r-msa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.34.0.

Change-Id: Ief67a7396f222a640a3c481cc1ac66c725204e00
2023-11-03 22:49:16 +01:00
Ricardo Wurmus a1e7f3f4c8
gnu: r-mutationalpatterns: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.12.0.

Change-Id: Ia0dd49b80c91865677cdba3f03f6acabfb5b155f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus db457fe95f
gnu: r-muscat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.16.0.

Change-Id: Idf30d38c285a0fddd2aab924ca3017dfd25b587a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 8288c11c51
gnu: r-mmuphin: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.16.0.

Change-Id: Ib8d6583456e76abea75d08dc21aaedffe5a46053
2023-11-03 22:49:16 +01:00
Ricardo Wurmus b4b48541f9
gnu: r-mfuzz: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.62.0.

Change-Id: If08902a17ecf2be089677634ee9d348e46295245
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 6faabe3a9f
gnu: r-methylkit: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.28.0.

Change-Id: I3040045d082d80a8e1f1e68691ad3c7bc561d3d3
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 7b4893ddb8
gnu: r-metaneighbor: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.22.0.

Change-Id: I24a17f7af9ccfb6a942bd0f24b187948d16bc07a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus b4421f7099
gnu: r-metagenomeseq: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.43.0.

Change-Id: Ia7e010752cb480bec3270f79dca748e2ccf4c53b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 9be6759f41
gnu: r-mdqc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.64.0.

Change-Id: If60e2e8f16e27362542298799dd30c70f91840fe
2023-11-03 22:49:16 +01:00
Ricardo Wurmus d485c6e39a
gnu: r-maser: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.20.0.

Change-Id: I02074e2ef18c4e2b3414d1d1ac3b325b3a28ee8b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 9f7a451e6b
gnu: r-manor: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.74.0.

Change-Id: I646db2726748aefdd8f6a437571cd5e9ad613862
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 30cecc4883
gnu: r-makecdfenv: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.78.0.

Change-Id: Ia37c4a66000d5c781baf2cce4e226aeba7e01d38
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 35d10e3429
gnu: r-made4: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.76.0.

Change-Id: I867a25181c61abbb9d65b0c53dc9cbad9d96a293
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 7a12d712eb
gnu: r-maaslin2: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.16.0.

Change-Id: Ib2bcd9049ffccf548295a6f1100a0b1f636f2a31
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 3e7eeef0db
gnu: r-limma: Update to 3.58.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.58.1.
[propagated-inputs]: Add r-statmod.
[native-inputs]: Add r-knitr.

Change-Id: I6f0b489fa71dfa5b359fece946493091f828795e
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 01220bcd00
gnu: r-lfa: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.2.0.

Change-Id: I940fd19d4baf1ba2b5b1a5cb35b4adfc6679a273
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 277cfebf79
gnu: r-lea: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.14.0.

Change-Id: I4a04bc3ea1e348825d40a60e12de6dffc2b2b1ef
2023-11-03 22:49:16 +01:00
Ricardo Wurmus c08b34c0e8
gnu: r-keggrest: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.42.0.

Change-Id: Ia2b21e89ede37cb437e894440869d5b9226f4244
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 4b85fc7175
gnu: r-interactivedisplaybase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.40.0.

Change-Id: Iac0d06e6e39b840ea35dbd0b219bc084bdb61c2d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 2d821734f0
gnu: r-interactivedisplay: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.40.0.
[propagated-inputs]: Remove r-biocmanager, r-dt, and r-zlibbioc.

Change-Id: Id99c933e595dc0291fb3570cd3c8e894e2b1ed26
2023-11-03 22:49:15 +01:00
Ricardo Wurmus b535785eff
gnu: r-impute: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.76.0.

Change-Id: Idd60ab4f9888c957d1d6e4423a18d0b3b3305521
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 3c8f3921f0
gnu: r-rhtslib: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.0.

Change-Id: I4d3d80435b6125c8111a925fbd3bf36a22f588d0
2023-11-03 22:49:15 +01:00
Ricardo Wurmus e28ffb7341
gnu: r-rdisop: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.62.0.

Change-Id: I9a43730743b2c5272c811a560c92cac9dddef1c8
2023-11-03 22:49:15 +01:00
Ricardo Wurmus f246bfb448
gnu: r-raggedexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.26.0.
[propagated-inputs]: Add r-biocbaseutils.

Change-Id: I44e267380de6286edd61f896bd688753c9fc9ea9
2023-11-03 22:49:15 +01:00
Ricardo Wurmus c333878ff5
gnu: r-radiogx: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.6.0.

Change-Id: I8f2ef5c78fd749487ebb104b2fc11f6406cbf8cc
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 8fab582215
gnu: r-r4rna: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.30.0.

Change-Id: I4a43b9df3f658c6eb34563e6d841f8c9b22a9fb5
2023-11-03 22:49:15 +01:00
Ricardo Wurmus d3281df551
gnu: r-r3cseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.48.0.

Change-Id: Ifa2805c0d0c76ebcdf0927923b9cb6f44cf9c981
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 4e5c14aae2
gnu: r-hpar: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.44.0.

Change-Id: Ie79908c8907b69b3ad537b23ff084025d5a76f14
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 7b39b6c668
gnu: r-harshlight: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.74.0.

Change-Id: Iceae81998c0eeccb8028c513eca46e70b388c985
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 135ebdd145
gnu: r-gsva: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.0.

Change-Id: Ib9bcb30aa669ff9d3445d38e22b656a8b43c2bb7
2023-11-03 22:49:15 +01:00
Ricardo Wurmus cef824b9f4
gnu: r-gseabase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.64.0.

Change-Id: I549083d0614b465d099c8ddfcccfca9e71a0a12b
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 844ea9ff66
gnu: r-gostats: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.68.0.

Change-Id: I3cb2e05944fd4d120e8c34454a5df892d9e105a2
2023-11-03 22:49:15 +01:00
Ricardo Wurmus f8946a7316
gnu: r-globaltest: Update to 5.56.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.56.0.

Change-Id: Ibf6ca75da7007a2164a3fa98989d6074eb50d266
2023-11-03 22:49:15 +01:00
Ricardo Wurmus b06f40836b
gnu: r-globalancova: Update to 4.20.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.20.0.

Change-Id: I99f47fabed129759582d568c11d8b495ee437706
2023-11-03 22:49:15 +01:00
Ricardo Wurmus e7b0370c46
gnu: r-glad: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.66.0.

Change-Id: I0b054d794790e0744aea5570b523fe37697152a9
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 4cc5a259ca
gnu: r-genomicranges: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.54.1.

Change-Id: I25c93f71691f7d8348c9a7580cd80b8a586a409e
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 2d2a79ca21
gnu: r-genomicfiles: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.38.0.

Change-Id: I4b5d7c93c6c839e501bbf5e612f7c3385eb44325
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 8fe366bda8
gnu: r-genomicfeatures: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.1.

Change-Id: I983eda850bdacb5955be0cbeec620e8835d5055e
2023-11-03 22:49:15 +01:00
Ricardo Wurmus df588ca56e
gnu: r-genomicdatacommons: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.26.0.

Change-Id: I4e820aaa390f0523467efe720c626d8aeffedd5d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 0c4c142cde
gnu: r-genomicalignments: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.0.

Change-Id: I30f11c8b0c1cfd58b3501461be7d7465f92b4662
2023-11-03 22:49:15 +01:00
Ricardo Wurmus dab13c9e14
gnu: r-genomeinfodb: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.0.

Change-Id: I27a7edf8c07b8438bd57632287e89ba1b373e3de
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 9845ee6e36
gnu: r-genomation: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.34.0.

Change-Id: I0ca0de18d3fbcd5a4bf89043647c87849c97eb26
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 035d905385
gnu: r-geneoverlap: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.38.0.

Change-Id: Iade3e4e2c1e65ea160829642d57933d6b8a8f56c
2023-11-03 22:49:15 +01:00
Ricardo Wurmus cdc6c83100
gnu: r-genefilter: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.84.0.

Change-Id: I8dc485dbed3600c0137969f24c39ce1241197347
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 149021491d
gnu: r-gage: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.52.0.

Change-Id: I673e00aaf9e901e17b3167cc6c32e55b90003734
2023-11-03 22:49:15 +01:00
Ricardo Wurmus cdb009029b
gnu: r-fastseg: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: Id3f6098e20062f7d007a54dc5cf83f11b5cf50dc
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 60b6dde680
gnu: r-ensembldb: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.26.0.

Change-Id: Ic2629e5eb3977a74f75fa7e3b5b4ad8e60f42ced
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 6f0023b8a4
gnu: r-enmix: Update to 1.38.01.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.38.01.
[propagated-inputs]: Remove r-preprocesscore; add r-irlba.

Change-Id: I0354f921aa427b6debb9fb5cde6a828529d7dbbf
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 5463d6e997
gnu: r-enhancedvolcano: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.20.0.

Change-Id: Iddbd14ecc8021030a23ffea6ae3217063d8bfebb
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 91bd1e4bb2
gnu: r-edger: Update to 4.0.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.1.
[native-inputs]: Add r-knitr.

Change-Id: Id72516ca581e9b65da3ea1723d008bf3d96b99c8
2023-11-03 22:49:14 +01:00