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Author SHA1 Message Date
Efraim Flashner b10c637e48
gnu: rust-libloading-0.6: Update to 0.6.7. 
* gnu/packages/crates-io.scm (rust-libloading-0.6): Update to 0.6.
[arguments]: Replace rust-cfg-if-0.1 with 1.
[inputs]: Add rust-cfg-if-1, rust-winapi-0.3.
 2021-03-15 15:53:15 +02:00
Efraim Flashner bafeee4f6d
gnu: dlib-0.4: Update to 0.4.2. 
* gnu/packages/crates-io.scm (rust-dlib-0.4): Update to 0.4.2.
[arguments]: Replace rust-libloading-0.5 with 0.6.
[inputs]: Add rust-libloading-0.6.
 2021-03-15 15:53:15 +02:00
Efraim Flashner 358f5d9b1b
gnu: rust-proc-macro2-1: Adapt for new build system. 
* gnu/packages/crates-io.scm (rust-proc-macro2-1)[inputs]: Add
rust-unicode-xid-0.2.
 2021-03-15 15:53:15 +02:00
Efraim Flashner c805bdd550
gnu: rust-winapi-0.3: Adjust for new build system. 
* gnu/packages/crates-io.scm (rust-winapi-0.3)[inputs]: Add
rust-winapi-i686-pc-windows-gnu, rust-winapi-x86-64-pc-windows-gnu.
 2021-03-15 15:53:14 +02:00
Efraim Flashner 12c699572c
gnu: rust-pkg-config-0.3: Hardcode location of pkg-config. 
* gnu/packages/crates-io.scm (rust-pkg-config-0.3)[arguments]: Add phase
to hardcode location of pkg-config binary.
 2021-03-15 15:53:14 +02:00
Efraim Flashner d499911432
gnu: rust-pkg-config-0.3: Update to 0.3.19. 
* gnu/packages/crates-io.scm (rust-pkg-config-0.3): Update to 0.3.19.
 2021-03-15 15:53:14 +02:00
Efraim Flashner 4363b542f2
gnu: rust-wayland-sys-0.28: Adapt for new build system. 
* gnu/packages/crates-graphics.scm (rust-wayland-sys-0.28)[arguments]:
Don't skip build. Add phase to refer explicitly to wayland libraries.
[inputs]: Add rust-dlib-0.4, rust-lazy-static-1, rust-libc-0.2,
rust-pkg-config-0.3.
[propagated-inputs]: Add wayland.
(rust-wayland-sys-0.23): Adjust accordingly.
 2021-03-15 15:53:14 +02:00
Efraim Flashner 69c757c45a
gnu: rust-quote-1: Update to 1.0.9. 
* gnu/packages/crates-io.scm (rust-quote-1): Update to 1.0.9.
 2021-03-15 15:53:14 +02:00
Efraim Flashner 78e7e178a3
build-system/cargo: Don't clobber packaged crates while building. 
This fixes an issue where two packages share a common dependent.

* guix/build/cargo-build-system.scm (unpack-rust-crates): Only copy rust
crates into the target directory if there isn't one already there with
the same name.
 2021-03-15 15:53:11 +02:00
zimoun bf612ead76
gnu: r-variantannotation: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
 2021-03-15 14:06:24 +01:00
zimoun 082f3c5433
gnu: r-edger: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
 2021-03-15 14:06:16 +01:00
zimoun 35b62c044e
gnu: r-genomeinfodb: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
 2021-03-15 14:05:56 +01:00
zimoun 8d6d75ff39
gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
 2021-03-15 14:05:47 +01:00
zimoun 9949f459bf
gnu: r-iranges: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-iranges): Move from here...
* gnu/packages/bioconductor.scm (r-iranges): ...to here.
 2021-03-15 14:05:37 +01:00
zimoun d64e3a487b
gnu: r-s4vectors: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here...
* gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
 2021-03-15 14:05:27 +01:00
zimoun 852fa82d4c
gnu: r-bioccheck: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here...
* gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
 2021-03-15 14:05:22 +01:00
zimoun d5576b6eb7
gnu: r-grohmm: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here...
* gnu/packages/bioconductor.scm (r-grohmm): ...to here.
 2021-03-15 14:04:26 +01:00
zimoun 5ac55aea8b
gnu: r-biocstyle: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
 2021-03-15 14:03:21 +01:00
zimoun 134404b437
gnu: r-biocviews: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
 2021-03-15 14:03:18 +01:00
Ricardo Wurmus 53dff6ac8f
gnu: r-rsqlite: Update to 2.2.4. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 2e2cc58681
gnu: r-rcpparmadillo: Update to 0.10.2.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 2fc2983e59
gnu: r-formatr: Update to 1.8. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.8.
[native-inputs]: Add r-knitr.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus fe903cb89d
gnu: r-survival: Update to 3.2-9. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus bbc542b53c
gnu: r-textshaping: Update to 0.3.2. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus ea23f17ece
gnu: r-mlr3tuning: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus 921ecdba7c
gnu: r-bbotk: Update to 0.3.1. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus ee92bb9004
gnu: r-workflows: Update to 0.2.2. 
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2.
[propagated-inputs]: Add r-vctrs.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus e4d4046999
gnu: r-spatstat: Update to 2.0-1. 
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1.
[propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv,
r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core,
r-spatstat-geom, and r-spatstat-linnet.
 2021-03-15 13:45:31 +01:00
Ricardo Wurmus b0036b407c
gnu: r-brms: Update to 2.15.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 7bd5a64303
gnu: r-forecast: Update to 8.14. 
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 58a2c438d3
gnu: r-lavaan: Update to 0.6-8. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus dae999bc48
gnu: r-parallelly: Update to 1.24.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus ecd03401c6
gnu: r-effectsize: Update to 0.4.4. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus b5aa552e63
gnu: r-magick: Update to 2.7.0. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus dfa052bbc9
gnu: r-blockfest: Update to 2.0. 
* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 796a2241e3
gnu: r-flextable: Update to 0.6.4. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 77e5a20c43
gnu: r-maptools: Update to 1.1-1. 
* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 87d3f805b9
gnu: r-utf8: Update to 1.2.1. 
* gnu/packages/cran.scm (r-utf8): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus d163c71e0a
gnu: r-xfun: Update to 0.22. 
* gnu/packages/cran.scm (r-xfun): Update to 0.22.
 2021-03-15 13:45:30 +01:00
Ricardo Wurmus 70257ad2c0
gnu: r-ipred: Update to 0.9-11. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus bfa09fd922
gnu: r-lava: Update to 1.6.9. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 172da782db
gnu: r-rvest: Update to 1.0.0. 
* gnu/packages/cran.scm (r-rvest): Update to 1.0.0.
[propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 7bdef3789d
gnu: r-zoo: Update to 1.8-9. 
* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus e1240e22f5
gnu: Add r-spatstat-linnet. 
* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 3ebae705f9
gnu: Add r-spatstat-core. 
* gnu/packages/cran.scm (r-spatstat-core): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus ddfe3f77a9
gnu: Add r-spatstat-geom. 
* gnu/packages/cran.scm (r-spatstat-geom): New variable.
 2021-03-15 13:45:29 +01:00
Ricardo Wurmus 78373e394d
gnu: Add r-spatstat-sparse. 
* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
 2021-03-15 13:45:29 +01:00
Léo Le Bouter 1ed435bf39
gnu: python-sphobjinv: Fix build. 
* gnu/packages/sphinx.scm (python-sphobjinv):
[patches]: Remove.
[propagated-inputs]: Add (uncomment) python-certifi.
 2021-03-15 12:51:54 +01:00
Léo Le Bouter 3096428889
gnu: libcroco/fixed: Make private. 
* gnu/packages/gnome.scm (libcroco/fixed): Use define instead of
define-public.
 2021-03-15 12:22:18 +01:00
Léo Le Bouter 8a085c1780
gnu: cyrus-sasl/fixed: Make private. 
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): Use define instead of
define-public.
 2021-03-15 12:22:17 +01:00