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Author SHA1 Message Date
Marius Bakke ab7010af1f
gexp: Allow character literals in GEXP->SEXP. 
Fixes <https://bugs.gnu.org/38628>.

* tests/gexp.scm ("lower-gexp, character literal"): New test.
* guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types.
* guix/repl.scm (self-quoting?): Likewise.
* gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
 2019-12-18 22:36:37 +01:00
Marius Bakke fe3110ac58
gnu: darktable: Update to 2.6.3. 
* gnu/packages/photo.scm (darktable): Update to 2.6.3.
 2019-12-18 22:36:37 +01:00
Marius Bakke 6b1e6b5c42
gnu: darktable: Remove redundant inputs. 
* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
 2019-12-18 22:36:37 +01:00
Marius Bakke 17ac8bb670
gnu: darktable: Fix build failure. 
* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from
 #:make-flags to a phase, so the GETENV call returns useful data.
 2019-12-18 22:36:37 +01:00
Marius Bakke 8e53fe2b91
gnu: Remove uses of deprecated Qemu network configuration. 
* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from
ARCH-SPECIFIC-FLAGS to the Qemu command line.  Use the "-nic" option of Qemu
instead of "-device" and "-net".
* gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command.
(virtual-machine-compiler): Use "-nic user,..." instead of "-net".
* doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix
in a VM): Do the same for examples.
 2019-12-18 22:36:37 +01:00
Mark H Weaver 7ebf4c40f1
gnu: linux-libre: Update to 5.3.18. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-18 15:13:41 -05:00
Mark H Weaver 96c158be1b
gnu: linux-libre: Update deblob scripts. 
* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90.
(deblob-scripts-4.14): Update to 4.14.159.
(deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version
numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts
themselves have not changed.
 2019-12-18 15:13:39 -05:00
Ricardo Wurmus 77e2de3654
gnu: Add r-biodist. 
* gnu/packages/bioconductor.scm (r-biodist): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0156297f29
gnu: Add r-biocworkflowtools. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 43b66e3f7c
gnu: Add r-biocset. 
* gnu/packages/bioconductor.scm (r-biocset): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4a18112dfb
gnu: Add r-biocpkgtools. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4d12c1e335
gnu: Add r-biocor. 
* gnu/packages/bioconductor.scm (r-biocor): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus c2b36a0441
gnu: Add r-bioconcotk. 
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0678479391
gnu: Add r-multiassayexperiment. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 244270e6ae
gnu: Add r-experimenthub. 
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 49f0860be0
gnu: Add r-biocgraph. 
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus f180be2923
gnu: Add r-bioccasestudies. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 21afe920f1
gnu: Add r-ebarrays. 
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus f388834e11
gnu: Add r-reactomepa. 
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus c373223e63
gnu: Add r-graphite. 
* gnu/packages/bioconductor.scm (r-graphite): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 3eacc8fa8f
gnu: Add r-influencer. 
* gnu/packages/cran.scm (r-influencer): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus ff1146b9b1
gnu: Add r-curatedtcgadata. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 6f15ea2415
gnu: Add r-reactome-db. 
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
 2019-12-18 15:29:07 +01:00
Efraim Flashner 7e9d6f0f3f
gnu: libmicrohttpd: Update to 0.9.69. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
 2019-12-18 10:34:27 +02:00
Efraim Flashner 8fd6049403
gnu: cmst: Update to 2019.01.13. 
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
 2019-12-18 10:29:28 +02:00
Efraim Flashner 92fe25130c
gnu: python-ecdsa: Actually run the test suite. 
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace
'check phase.
[native-inputs]: Add python-pytest.
 2019-12-18 09:54:47 +02:00
Efraim Flashner c57b8419f4
gnu: python-ecdsa: Update to 0.14.1. 
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1.
[inputs]: Move openssl ...
[native-inputs]: ... to here.
[propagated-inputs]: Add python-six.
 2019-12-18 09:53:48 +02:00
Björn Höfling 356a79becc
swh: Fix API call for getting origin. 
When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.

* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
 2019-12-17 23:29:32 +01:00
Mark H Weaver ef6856ea72
gnu: linux-libre: Update to 5.3.17. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-17 17:24:23 -05:00
Mark H Weaver a15adacb52
gnu: linux-libre@4.19: Update to 4.19.90. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90.
(linux-libre-4.19-pristine-source): Update hash.
 2019-12-17 17:23:42 -05:00
Mark H Weaver 0bb64e1796
gnu: linux-libre@4.14: Update to 4.14.159. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159.
(linux-libre-4.14-pristine-source): Update hash.
 2019-12-17 17:22:36 -05:00
Ricardo Wurmus 29fd736a66
gnu: Add r-biobroom. 
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 48bcbef07a
gnu: Add r-bioassayr. 
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 991554fc92
gnu: Add r-chemminer. 
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus d38775b13f
gnu: Add r-bigpint. 
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 820373dbc8
gnu: Add r-bigmemoryextras. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 6ca6f8663b
gnu: Add r-biggr. 
* gnu/packages/bioconductor.scm (r-biggr): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 5aef09bd0e
gnu: Add r-hyperdraw. 
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 75a8bb3185
gnu: Add r-hypergraph. 
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus e823337c6e
gnu: Add r-rsbml. 
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 40fe63ad8a
gnu: Add r-bifet. 
* gnu/packages/bioconductor.scm (r-bifet): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus de9374b73c
gnu: Add r-bicare. 
* gnu/packages/bioconductor.scm (r-bicare): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 6bd50acf41
gnu: Add r-bhc. 
* gnu/packages/bioconductor.scm (r-bhc): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 75eb1149f3
gnu: Add r-bgx. 
* gnu/packages/bioconductor.scm (r-bgx): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus d11d6feafa
gnu: Add r-bgmix. 
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 1028bf0a05
gnu: Add r-rsvg. 
* gnu/packages/cran.scm (r-rsvg): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 59d485e118
gnu: Add r-shinycssloaders. 
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 96afb6c683
gnu: Add r-lim. 
* gnu/packages/cran.scm (r-lim): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus c686e53afe
gnu: Add r-diagram. 
* gnu/packages/cran.scm (r-diagram): New variable.
 2019-12-17 20:02:15 +01:00
Ricardo Wurmus 5828dd030b
gnu: Add r-poibin. 
* gnu/packages/cran.scm (r-poibin): New variable.
 2019-12-17 20:02:15 +01:00