gnu: Add r-bioconcotk.

* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
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Ricardo Wurmus 2019-12-18 15:25:17 +01:00
parent 0678479391
commit c2b36a0441
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@ -7204,3 +7204,46 @@ (define-public r-multiassayexperiment
classes for individual assays, and allowing subsetting by genomic ranges or
rownames.")
(license license:artistic2.0)))
(define-public r-bioconcotk
(package
(name "r-bioconcotk")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiocOncoTK" version))
(sha256
(base32
"0rnah6c01a33yb9663jim9iclan61rpcwprb56mykgn1pf5hywbj"))))
(properties `((upstream-name . "BiocOncoTK")))
(build-system r-build-system)
(propagated-inputs
`(("r-bigrquery" ,r-bigrquery)
("r-car" ,r-car)
("r-complexheatmap" ,r-complexheatmap)
("r-curatedtcgadata" ,r-curatedtcgadata)
("r-dbi" ,r-dbi)
("r-dplyr" ,r-dplyr)
("r-dt" ,r-dt)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggpubr" ,r-ggpubr)
("r-graph" ,r-graph)
("r-httr" ,r-httr)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-plyr" ,r-plyr)
("r-rgraphviz" ,r-rgraphviz)
("r-rjson" ,r-rjson)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-shiny" ,r-shiny)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/BiocOncoTK")
(synopsis "Bioconductor components for general cancer genomics")
(description
"The purpose of this package is to provide a central interface to various
tools for genome-scale analysis of cancer studies.")
(license license:artistic2.0)))