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Author SHA1 Message Date
Tobias Geerinckx-Rice 9e983c611e
gnu: lesspipe: Update to 2.08. 
* gnu/packages/less.scm (lesspipe): Update to 2.08.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 9991028fef
gnu: libtraceevent: Shorten source snippet. 
* gnu/packages/linux.scm (libtraceevent)[source]:
Use SUBSTITUTE*'s features.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 1063a3b564
gnu: libtraceevent: Update to 1.7.3. 
* gnu/packages/linux.scm (libtraceevent): Update to 1.7.3.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 4feaefbb27
gnu: gnome-multi-writer: Fix build. 
* gnu/packages/gnome.scm (gnome-multi-writer)[native-inputs]: Add gettext-minimal.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 33166500d2
gnu: gnome-multi-writer: Remove input labels. 
* gnu/packages/gnome.scm (gnome-multi-writer)[native-inputs]:
Remove input labels.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 3a63ed24f2
gnu: rspamd: Update to 3.5. 
* gnu/packages/mail.scm (rspamd): Update to 3.5.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice f86cd0280e
gnu: ytnef: Update to 2.1.2. 
* gnu/packages/mail.scm (ytnef): Update to 2.1.2.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice e0c434ee72
gnu: tpacpi-bat: Fix cross-compilation. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Use SEARCH-INPUT-FILE.
[inputs]: Add coreutils-minimal.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice 4267580a53
gnu: tpacpi-bat: Update to 3.2. 
* gnu/packages/linux.scm (tpacpi-bat): Update to 3.2.
[arguments]: Don't explicitly return #t from phases.
linux tpacpi-bat
 2023-07-16 02:00:07 +02:00
Maxim Cournoyer 1d837aaa32
tests: lightdm: Bump timeout waiting for screen text to 60 seconds. 
This is to avoid non-deterministic failures on slower machines.

* gnu/tests/lightdm.scm (run-lightdm-test) <wait-for-screen-text>: Bump
timeout to 60 s (from the default 30 s).
 2023-07-19 10:38:15 -04:00
Maxim Cournoyer 1edbadc6b4
tests: xvnc: Fix 'gdm auto-suspend is disabled' test. 
This failure is another collateral from commit a09c7da ("tests: Fork and exec
a new Guile for the marionette REPL."), which isolated the marionette
evaluation environment from that of the host.

* gnu/tests/vnc.scm (run-xvnc-test): Move the (guix build utils) import to...
["gdm auto-suspend is disabled"]: ... inside the marionette-eval of this
test.  Complete comment.

Reported-by: Bruno Victal <mirai@makinata.eu>
 2023-07-19 10:38:15 -04:00
Bruno Victal 9542429299
tests: xvnc: Group up GDM test and use GNU Ocrad instead of Tesseract. 
* gnu/tests/vnc.scm (run-xvnc-test): Group up GDM test.  Use GNU Ocrad.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-07-19 10:38:15 -04:00
Bruno Victal ab2abe16de
tests: gdm: Prefer OCR to delay. 
* gnu/tests/gdm.scm (run-gdm-test): Use wait-for-screen-text instead of sleep.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-07-19 10:38:15 -04:00
Bruno Victal 6a86e2d13a
marionette: Allow passing custom OCR arguments. 
* gnu/build/marionette.scm (%default-ocrad-arguments): New variable.
(invoke-ocrad-ocr, invoke-tesseract-ocr, marionette-screen-text)
[ocr-arguments]: New argument.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-07-19 10:38:15 -04:00
Ricardo Wurmus b9bd1bcce9
import/utils: beautify-description: Wrap class names in @code{...}. 
* guix/import/utils.scm (beautify-description): Add procedure to wrap words in
@code{...} markup.
* tests/import-utils.scm: Add two tests.
 2023-07-19 15:53:28 +02:00
Ricardo Wurmus 5566f691a2
gnu: Add r-qfeatures. 
* gnu/packages/bioconductor.scm (r-qfeatures): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus 16a05db0ac
gnu: Add r-spectra. 
* gnu/packages/bioconductor.scm (r-spectra): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus 3fa6c2b1cb
gnu: Add r-rtcgatoolbox. 
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus 45bf1a9a6b
import/utils: Add more initial words to beautify-description. 
* guix/import/utils.scm (beautify-description): Add "Classes" and "Tools" to
initial words to be prefixed with "This package provides".
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 571ad39628
gnu: Add r-gwastools. 
* gnu/packages/bioconductor.scm (r-gwastools): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 5be6946e19
gnu: Add r-beadarray. 
* gnu/packages/bioconductor.scm (r-beadarray): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus a4dc8edced
gnu: Add r-beaddatapackr. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 9cf4d48850
gnu: Add r-ucell. 
* gnu/packages/bioconductor.scm (r-ucell): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 91b1367e90
gnu: Add r-tcgautils. 
* gnu/packages/bioconductor.scm (r-tcgautils): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 3132fcf7f8
gnu: Add r-globalancova. 
* gnu/packages/bioconductor.scm (r-globalancova): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 72e6324b4a
gnu: Add r-seqarray. 
* gnu/packages/bioconductor.scm (r-seqarray): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 1f80d41735
gnu: Add r-nebulosa. 
* gnu/packages/bioconductor.scm (r-nebulosa): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 15b35874b1
gnu: Add r-ggtreeextra. 
* gnu/packages/bioconductor.scm (r-ggtreeextra): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus c63da4eb52
gnu: Add r-survcomp. 
* gnu/packages/bioconductor.scm (r-survcomp): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus 2edbfd43aa
gnu: r-missmethyl: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section
to packages section.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus e74e9f6240
gnu: r-cellid: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to
packages section.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus efec1a8453
gnu: Add r-mfuzz. 
* gnu/packages/bioconductor.scm (r-mfuzz): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus 5a20a14c3e
gnu: Add r-raggedexperiment. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus 9d45783d77
gnu: Add r-spatialexperiment. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus c5f9e435da
gnu: Add r-singscore. 
* gnu/packages/bioconductor.scm (r-singscore): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus f77216721e
gnu: Add r-plyranges. 
* gnu/packages/bioconductor.scm (r-plyranges): New variable.
 2023-07-19 14:57:07 +02:00
Ricardo Wurmus b7d3a9e2f5
gnu: Add r-tkwidgets. 
* gnu/packages/bioconductor.scm (r-tkwidgets): New variable.
 2023-07-19 14:56:11 +02:00
Ricardo Wurmus dc889e85a9
gnu: Add r-dyndoc. 
* gnu/packages/bioconductor.scm (r-dyndoc): New variable.
 2023-07-19 14:55:11 +02:00
Ricardo Wurmus d0c96a78ed
gnu: Add r-genomicdatacommons. 
* gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable.
 2023-07-19 14:54:02 +02:00
Ricardo Wurmus 46cae56dfe
gnu: Add r-snprelate. 
* gnu/packages/bioconductor.scm (r-snprelate): New variable.
 2023-07-19 14:53:06 +02:00
Ricardo Wurmus b4cfd40aae
gnu: Add r-enhancedvolcano. 
* gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable.
 2023-07-19 14:37:54 +02:00
Ricardo Wurmus 1b48d723bd
gnu: Add r-logistf. 
* gnu/packages/cran.scm (r-logistf): New variable.
 2023-07-19 13:09:32 +02:00
Ricardo Wurmus c31eea21dd
gnu: Add r-formula-tools. 
* gnu/packages/cran.scm (r-formula-tools): New variable.
 2023-07-19 13:09:25 +02:00
Ricardo Wurmus 5f6daad3c8
gnu: Add r-operator-tools. 
* gnu/packages/cran.scm (r-operator-tools): New variable.
 2023-07-19 13:09:03 +02:00
Ricardo Wurmus 4415a421c4
gnu: Add r-uchardet. 
* gnu/packages/cran.scm (r-uchardet): New variable.
 2023-07-19 13:08:47 +02:00
Ricardo Wurmus ff6b2a88c4
gnu: Add r-gwasexacthw. 
* gnu/packages/cran.scm (r-gwasexacthw): New variable.
 2023-07-19 13:08:02 +02:00
Ricardo Wurmus b2750695f7
gnu: Add r-gsva. 
* gnu/packages/bioconductor.scm (r-gsva): New variable.
 2023-07-19 09:56:55 +02:00
Andre A. Gomes 1f53bfb7d7
gnu: cl-usocket: Update to 0.8.6. 
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.6.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-19 09:14:25 +02:00
Andre A. Gomes 324f56927b
gnu: cl-ndebug: Update to 0.2.0. 
* gnu/packages/lisp-xyz.scm (sbcl-ndebug): Update to 0.2.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-19 09:12:01 +02:00
Andre A. Gomes 54a49cf1cc
gnu: cl-lisp-unit2: Update to 0.9.4-0.b5aa17b. 
* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4-0.b5aa17b.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-07-19 09:10:10 +02:00