Ricardo Wurmus
8c033085cc
gnu: r-chipkernels: Use git-version and git-file-name.
...
* gnu/packages/bioinformatics.scm (r-chipkernels)[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 16:09:35 +02:00
Ricardo Wurmus
3acfbd4811
gnu: f-seq: Use git-version and git-file-name.
...
* gnu/packages/bioinformatics.scm (f-seq)[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 16:09:07 +02:00
Ricardo Wurmus
09b50a6ec2
gnu: bismark: Use git-file-name.
...
* gnu/packages/bioinformatics.scm (bismark)[source]: Use git-file-name.
2021-05-31 16:08:47 +02:00
Ricardo Wurmus
f383f9e311
gnu: filevercmp: Use git-version.
...
* gnu/packages/bioinformatics.scm (filevercmp)[version]: Use git-version; bind
"revision" in outer let.
2021-05-31 16:08:12 +02:00
Ricardo Wurmus
ec543ba672
gnu: r-chipseeker: Move out of experiment section.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the
"experiment" section to the section for regular Bioconductor packages.
2021-05-31 15:54:41 +02:00
Ricardo Wurmus
a6e7afd4d5
gnu: r-spp: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
2021-05-31 15:53:20 +02:00
Ricardo Wurmus
1a6108ce2b
gnu: r-geneoverlap: Move out of experiment section.
...
* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition
out of the "experiment" section into the section for regular Bioconductor
packages.
2021-05-31 15:53:09 +02:00
Ricardo Wurmus
b0ecd6cea9
gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1.
...
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): Bind the commit
outside of the package value.
[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 15:46:30 +02:00
zimoun
c294c0d782
gnu: r-methylkit: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here...
* gnu/packages/bioconductor.scm (r-methylkit): ...to here.
2021-05-31 15:39:49 +02:00
zimoun
7ab44aeed6
gnu: r-copywriter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
2021-05-31 15:39:49 +02:00
zimoun
36cb01066c
gnu: r-copyhelper: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31 15:39:47 +02:00
zimoun
31e50e1f48
gnu: r-chipseq: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
0eaa75c811
gnu: r-rhdf5: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
cc1dbea883
gnu: r-annotationfilter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
67e99369c1
gnu: r-rhdf5filters: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
b6e84d30eb
gnu: r-tximport: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
bf8f502956
gnu: r-mutationalpatterns: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
7360dea624
gnu: r-rcas: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rcas): Move from here...
* gnu/packages/bioconductor.scm (r-rcas): ...to here.
2021-05-31 15:39:00 +02:00
zimoun
45b6db4fb4
gnu: r-bamsignals: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
2021-05-31 15:38:59 +02:00
zimoun
043c309d15
gnu: r-rhtslib: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here...
* gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
2021-05-31 15:38:59 +02:00
zimoun
e0c81584ea
gnu: r-zlibbioc: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Move from here...
* gnu/packages/bioconductor.scm (r-zlibbioc): ...to here.
2021-05-31 15:38:58 +02:00
zimoun
0006a66415
gnu: r-seqlogo: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here...
* gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
2021-05-31 15:38:21 +02:00
zimoun
c2a18aee16
gnu: r-motifrg: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
2021-05-31 15:38:00 +02:00
zimoun
621aa3b442
gnu: r-sva: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-sva): Move from here...
* gnu/packages/bioconductor.scm (r-sva): ...to here.
2021-05-31 15:38:00 +02:00
zimoun
900ef8fb1e
gnu: r-protgenerics: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-protgenerics): ...to here.
2021-05-31 15:38:00 +02:00
zimoun
720d2694a5
gnu: r-mzr: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-mzr): Move from here...
* gnu/packages/bioconductor.scm (r-mzr): ...to here.
2021-05-31 15:38:00 +02:00
zimoun
88cf24febb
gnu: r-ensembldb: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Move from here...
* gnu/packages/bioconductor.scm (r-ensembldb): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
fea33b9d1e
gnu: r-biovizbase: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here...
* gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
8d4311bb8e
gnu: r-vsn: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-vsn): Move from here...
* gnu/packages/bioconductor.scm (r-vsn): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
96ae9822c4
gnu: r-affyio: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
8182e6a6fd
gnu: r-organismdbi: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here...
* gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
d1ea2b7c8b
gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Move from here...
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
0b5b41c561
gnu: r-genomicfiles: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
ff65fa90d2
gnu: r-complexheatmap: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Move from here...
* gnu/packages/bioconductor.scm (r-complexheatmap): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
84019edf38
gnu: r-gage: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-gage): Move from here...
* gnu/packages/bioconductor.scm (r-gage): ...to here.
2021-05-31 15:37:59 +02:00
zimoun
d0a5503752
gnu: r-keggrest: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-keggrest): Move from here...
* gnu/packages/bioconductor.scm (r-keggrest): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
22cda2e432
gnu: r-affy: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-affy): Move from here...
* gnu/packages/bioconductor.scm (r-affy): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
32ae36e96f
gnu: r-fastseg: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
9644745692
gnu: r-annotationhub: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here...
* gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
dfe6224f5f
gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
f6f43a2d40
gnu: r-edaseq: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-edaseq): Move from here...
* gnu/packages/bioconductor.scm (r-edaseq): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
ef954bb488
gnu: r-deseq: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
bb118f20fe
gnu: r-aroma-light: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here...
* gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
7756e08b44
gnu: r-mzid: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-mzid): Move from here...
* gnu/packages/bioconductor.scm (r-mzid): ...to here.
2021-05-31 15:37:58 +02:00
zimoun
ad46c8aa7f
gnu: r-pcamethods: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Move from here...
* gnu/packages/bioconductor.scm (r-pcamethods): ...to here.
2021-05-31 15:37:57 +02:00
zimoun
d7fa9c1ffd
gnu: r-genomationdata: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31 15:37:55 +02:00
zimoun
f8fe5497c7
gnu: r-genomation: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomation): Move from here...
* gnu/packages/bioconductor.scm (r-genomation): ...to here.
2021-05-31 15:36:32 +02:00
zimoun
f3b50aa4fd
gnu: r-go-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
2021-05-31 15:35:53 +02:00
zimoun
14fb30e5f6
gnu: r-seqpattern: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
2021-05-31 15:35:30 +02:00
zimoun
b832fddbfc
gnu: r-impute: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-impute): Move from here...
* gnu/packages/bioconductor.scm (r-impute): ...to here.
2021-05-31 15:34:45 +02:00
