gnu: r-go-db: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
This commit is contained in:
zimoun 2021-05-21 22:25:43 +02:00 committed by Ricardo Wurmus
parent 14fb30e5f6
commit f3b50aa4fd
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GPG key ID: 197A5888235FACAC
2 changed files with 22 additions and 24 deletions

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@ -436,6 +436,28 @@ (define-public r-genomeinfodbdata
ID and species. It is used by functions in the GenomeInfoDb package.")
(license license:artistic2.0)))
(define-public r-go-db
(package
(name "r-go-db")
(version "3.7.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GO.db" version 'annotation))
(sha256
(base32
"0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
(properties
`((upstream-name . "GO.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://bioconductor.org/packages/GO.db")
(synopsis "Annotation maps describing the entire Gene Ontology")
(description
"The purpose of this GO.db annotation package is to provide detailed
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")

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@ -7952,30 +7952,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-go-db
(package
(name "r-go-db")
(version "3.7.0")
(source (origin
(method url-fetch)
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/GO.db_"
version ".tar.gz"))
(sha256
(base32
"0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
(properties
`((upstream-name . "GO.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://bioconductor.org/packages/GO.db")
(synopsis "Annotation maps describing the entire Gene Ontology")
(description
"The purpose of this GO.db annotation package is to provide detailed
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-spp
(package
(name "r-spp")