Commit graph

57711 commits

Author SHA1 Message Date
Ludovic Courtès 7cb77b7896
gnu: mailutils: Update to 3.9.
* gnu/packages/mail.scm (mailutils): Update to 3.9.
[arguments]: In 'prepare-test-suite' phase, adjust name of the mda
'testsuite' files.
2020-03-27 19:09:30 +01:00
Ludovic Courtès 2b6fe60599
packages: Use Guile 3.0 for grafts.
* guix/packages.scm (guile-2.0): Rename to...
(guile-for-grafts): ... this, and adjust callers.  Refer to 'guile-3.0'
instead of 'guile-2.0'.
2020-03-27 19:09:30 +01:00
Ludovic Courtès 3139739802
gnu: guile-next: Update to 3.0.2.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2.
* gnu/packages/patches/guile-3.0-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-27 19:09:30 +01:00
Pierre Neidhardt eb5341c235
gnu: Add trivial-package-local-nicknames.
* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames,
  sbcl-trivial-package-local-nicknames): New variables.
2020-03-27 18:40:21 +01:00
Ricardo Wurmus bc3fda5d2b
services/nfs: Replace nfs-version with nfs-versions.
Instead of accepting a string for just one protocol version accept a list of
supported versions.

* gnu/services/nfs.scm (<nfs-configuration>)[nfs-version]: Remove field and
replace...
[nfs-versions]: ...with this new field.
(nfs-shepherd-services): Pass as many "--nfs-version" options as there are
supported versions.
* doc/guix.texi (Network File System): Document nfs-versions.
2020-03-27 15:30:44 +01:00
Jakub Kądziołka 9483782a61
gnu: rust: Add 1.39
* gnu/packages/rust.scm (rust-1.39): New variable.
  (%cargo-reference-hash): Add a comment explaining the role of the
  variable.
2020-03-27 14:28:11 +01:00
Jakub Kądziołka 444bc2ddf2
gnu: rust: Add 1.38
All packages are still built with rustc 1.37, but users will see rustc
1.38 in their profiles, and packages that require newer compiler
versions will be possible to add.

* gnu/packages/rust.scm (rust-1.31): Factor out the
  patch-command-exec-tests phase to a separate procedure.
  (patch-command-exec-tests-phase): New procedure.
  (rust): Rename to rust-1.37, make rust an alias.
  (rust-1.38): New variable.
2020-03-27 14:28:06 +01:00
Nicolas Goaziou 1a7247c629
gnu: asymptote: Update to 2.65.
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
2020-03-27 12:20:35 +01:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 37732212a3
gnu: r-locfit: Update to 1.5-9.4.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus c99880320d
gnu: r-class: Update to 7.3-16.
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 3345157fa6
gnu: r-xgboost: Update to 1.0.0.2.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 76d7ce4f45
gnu: r-rjava: Update to 0.9-12.
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 84b7c4aa17
gnu: r-sf: Update to 0.9-0.
* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 498c887a96
gnu: r-bayestestr: Update to 0.5.3.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 9c189913e9
gnu: r-hdf5r: Update to 1.3.2.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 6232a36291
gnu: r-ggally: Update to 1.5.0.
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-27 11:21:13 +01:00
Christopher Baines 0a76a4e073
gnu: guix-data-service: Update to 0.0.1-19.d1c243f.
These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
2020-03-26 22:51:36 +00:00
Lars-Dominik Braun 01d5f2c5cd
gnu: Add python-json5.
* gnu/packages/python-xyz.scm (python-json5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Lars-Dominik Braun aefcfecd84
gnu: Add python-pytest-check-links.
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Ludovic Courtès be6520e6a5
vm: Distinguish between success and failure of the guest code.
Fixes <https://bugs.gnu.org/34276>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]:
Produce '/xchg/.exit-status' file upon success.
* gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status'
once QEMU has completed and respond accordingly.
2020-03-26 23:45:41 +01:00
Jakub Kądziołka 60eee3e6de
gnu: Add ROPgadget.
* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26 22:53:02 +01:00
Björn Höfling eebaed2b76
gnu: java-tomcat: Update to 8.5.53.
This fixes CVE-2020-1938 ("Ghostcat").

* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
2020-03-26 21:39:49 +01:00
Marius Bakke 3089b70d76
gnu: icu4c: Explicitly add patch flags in replacement package.
This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.

* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26 21:15:08 +01:00
Marius Bakke 9ea9ff6b0f
gnu: help2man: Update to 1.47.13.
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26 20:20:48 +01:00
Alexandros Theodotou 9b0c95cc68
gnu: Add python-pywinrm.
* gnu/packages/python-xyz.scm (python-pywinrm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou c596359729
gnu: Add python-requests_ntlm.
* gnu/packages/python-web.scm (python-requests_ntlm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou 163997c961
gnu: Add python-ntlm-auth.
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou f8dcdf2b36
gnu: Add python-kerberos.
* gnu/packages/python-crypto.scm (python-kerberos): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Roel Janssen 79c395dde3
gnu: Update sambamba to 0.7.1.
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
  Remove unneeded undead input.
2020-03-26 18:08:27 +01:00
Naga Malleswari db47adb0c7
gnu: Add 7kaa.
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26 15:55:02 +01:00
Efraim Flashner 50e45d8629
gnu: boinc-client: Update to 7.16.5.
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26 14:08:24 +02:00
Efraim Flashner f87d594238
gnu: boinc-server: Fix build.
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
2020-03-26 14:08:24 +02:00
Ludovic Courtès 260eae7893
status: Display synthetic information about profiles being built.
* guix/status.scm (print-build-event): Add 'profile case.
* guix/scripts/package.scm (build-and-use-profile): Remove now redundant
message.
2020-03-26 13:07:19 +01:00
Ludovic Courtès e7570ec2da
profiles: 'profile-derivation' sets a 'type' property.
* guix/profiles.scm (profile-derivation): Pass #:properties to
'gexp->derivation'.
2020-03-26 13:07:19 +01:00
Ludovic Courtès c7af9d0b5e
gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.
Fixes <https://bugs.gnu.org/24076>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26 13:07:19 +01:00
Efraim Flashner 315b98b9eb
gnu: youtube-viewer: Don't build gtk3 front-end.
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
2020-03-26 12:56:10 +02:00
Efraim Flashner b5a26299f7
gnu: youtube-viewer: Update to 3.7.5.
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
2020-03-26 12:56:07 +02:00
Mathieu Othacehe b03ebdbc7c
tests: install: Add %test-gui-installed-desktop-os-encrypted.
* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services,
(installation-target-os-for-gui-tests): new procedure,
(installation-target-desktop-os-for-gui-tests): new procedure,
(guided-installation-test): add target-os and desktop? arguments. Use
target-os instead of the previous os variable. Pass desktop? argument to
gui-test-program.
(%test-gui-installed-os): Adapt accordingly,
(%test-gui-installed-os-encrypted): ditto,
(%test-gui-installed-desktop-os-encrypted): new exported variable.
2020-03-26 11:53:50 +01:00
Mathieu Othacehe 7a1a10dbd4
installer: tests: Use a filter to select desktop-environments.
* gnu/installer/tests.scm (choose-services): Turn desktop-environments list
into a choose-desktop-environment procedure. This way, it is easier to select
all desktop-environments or none, in the same way as choose-network-service?
and choose-network-management-tool? arguments.
2020-03-26 11:53:50 +01:00
Pierre Neidhardt 62c27e09f0
gnu: emacs-helm-exwm: Update to 0.0.2.
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26 09:00:46 +01:00
Ricardo Wurmus 90fb592321
gnu: r-argon2: Fix case in synopsis and use full sentence in description.
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 5c3902a762
gnu: r-getpass: Change case in synopsis and adjust indentation.
* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus f03e62c12d
gnu: r-remoter: Fix indentation.
* gnu/packages/cran.scm (r-remoter): Fix indentation.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 9bde1b1348
gnu: r-remoter: Use lower case in the synopsis.
* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
2020-03-26 08:28:41 +01:00
Vagrant Cascadian 730a4b10fa
gnu: linux-libre-5.4-source: Add patch to support pinebook pro.
* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
2020-03-25 18:59:25 -07:00
Mark H Weaver 2a57b72251
gnu: linux-libre: Update deblob scripts.
* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
2020-03-25 20:39:05 -04:00
Mark H Weaver 5cc6271d22
gnu: linux-libre: Update to 5.4.28.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-25 20:37:38 -04:00
Mark H Weaver 1d777c7837
gnu: linux-libre@4.19: Update to 4.19.113.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-25 20:36:25 -04:00
Leo Famulari 7d57a190f6
gnu: icu4c: Fix CVE-2020-10531.
* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
2020-03-25 17:53:59 -04:00