Commit graph

10344 commits

Author SHA1 Message Date
Mathieu Lirzin
9ef824c10e gnu: xterm: Update to 322.
* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
宋文武
a65e26f091 gnu: epiphany: Update to 3.18.2.
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
宋文武
19e5258d84 gnu: webkitgtk: Update to 2.10.4.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
宋文武
c0a9589da2 doc: Document network-manager-service.
* doc/guix.texi (Networking Services): Document network-manager-service.
2016-01-08 08:06:40 +08:00
Ludovic Courtès
b110869dd3 doc: Add elaborate package search example.
* doc/guix.texi (Invoking guix package): Add elaborate --search example
using recsel and sexes.
2016-01-08 00:09:50 +01:00
Pjotr Prins
c8d969b58f gnu: Add Pfff.
* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
Alex Kost
fbbaa4dde8 gnu: mpv: Remove 'samba' input.
This is a heavy-weight and uncommon feature.  See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.

* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
Alex Kost
0a5ec7092d emacs: Display supported systems in "Package Info".
* emacs/guix-main.scm (%package-param-alist): Add 'systems'.
* emacs/guix-ui-package.el (guix-package-info-insert-systems): New
  procedure.
  (guix-package-info-format): Add it.
  (guix-output-info-format): Likewise.
  (guix-package-info-titles): Add "Supported systems" title.
2016-01-07 22:30:18 +03:00
Ricardo Wurmus
cb933df6da gnu: Add genomation.
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
03ea5a357e gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
c43a011de3 gnu: Add impute.
* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
c63cef6699 gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
fbf6045e33 gnu: Add plotly.
* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
a28d646b63 gnu: Add viridis.
* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
d547ce5e70 gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
e05c37da4a gnu: Add matrixStats.
* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
3703ffb41f gnu: Add R.rsp.
* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
a63efbb453 gnu: Add R.cache.
* gnu/packages/statistics.scm (r-r-cache): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
9c94b53b5b gnu: Add R.utils.
* gnu/packages/statistics.scm (r-r-utils): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
c8c75a8d88 gnu: Add R.oo.
* gnu/packages/statistics.scm (r-r-oo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus
8bfe007c9c gnu: Add R.methodsS3.
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
a69a593595 gnu: Add base64enc.
* gnu/packages/statistics.scm (r-base64enc): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
a8227e4ae9 gnu: Add DT.
* gnu/packages/statistics.scm (r-dt): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
d706257b5b gnu: Add SparseM.
* gnu/packages/statistics.scm (r-sparsem): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
fb25d8803f gnu: Add GO.db.
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
2fd7c04984 gnu: Add GenomicFeatures.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
317755ff0f gnu: Add rtracklayer.
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
d8a828af78 gnu: Add GenomicAlignments.
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
6e76dda2d0 gnu: Add SummarizedExperiment.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
f8d74f7018 gnu: Add Rsamtools.
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
bf15935337 gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
e91d362e48 gnu: Add BiocParallel.
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
c465fa72ed gnu: Add biomaRt.
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
8b7bce740d gnu: Add AnnotationDbi.
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
555e3399dc gnu: Add Biobase.
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
bc899123e7 gnu: Add snow.
* gnu/packages/statistics.scm (r-snow): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
6b82f56cf9 gnu: Add futile.logger.
* gnu/packages/statistics.scm (r-futile-logger): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
b9ff33b50e gnu: Add futile.options.
* gnu/packages/statistics.scm (r-futile-options): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
ca65d387fd gnu: Add lambda.r.
* gnu/packages/statistics.scm (r-lambda-r): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
543ded3619 gnu: Add r-xml.
* gnu/packages/statistics.scm (r-xml): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
cefaa79c9e gnu: Add RCurl.
* gnu/packages/statistics.scm (r-rcurl): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus
21e4d6a9cf gnu: Add RSQLite.
* gnu/packages/statistics.scm (r-rsqlite): New variable.
2016-01-07 17:18:15 +01:00
Ricardo Wurmus
34a75d35bb import: Rename "cran-fetch" to "fetch-description".
* guix/import/cran.scm (cran-fetch): Rename procedure ...
(fetch-description): ... to this.
2016-01-07 17:18:04 +01:00
Ricardo Wurmus
d1c116089b import: Add package->upstream-name procedure.
* guix/import/cran.scm (package->upstream-name): New procedure.
2016-01-07 17:18:02 +01:00
Raimon Grau
fe9451c50a gnu: Add xmlstarlet.
* gnu/packages/xml.scm (xmlstarlet): New variable.
2016-01-07 16:00:00 +01:00
宋文武
29e255ca83 gnu: zita-convolver: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
宋文武
6dff495580 gnu: zita-resampler: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
Ben Woodcroft
7d3a1a2dd2 gnu: Add ruby-ansi.
* gnu/packages/ruby.scm (ruby-ansi): New variable.
2016-01-07 15:36:05 +01:00
Ricardo Wurmus
5dfd276602 gnu: edirect: Update to 3.50.
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
2016-01-07 11:25:24 +01:00
Leo Famulari
62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers.
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00