gnu: Add genomation.

* gnu/packages/bioinformatics.scm (r-genomation): New variable.
This commit is contained in:
Ricardo Wurmus 2015-12-23 17:35:04 +01:00
parent 03ea5a357e
commit cb933df6da

View file

@ -3912,6 +3912,49 @@ (define-public r-seqpattern
reference point and sorted by a user defined feature.")
(license license:gpl3+)))
(define-public r-genomation
(package
(name "r-genomation")
(version "1.2.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "genomation" version))
(sha256
(base32
"1mzs995snwim13qk9kz4q3nczpnbsy1allwp4whfq0cflg2mndfr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-data-table" ,r-data-table)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-gridbase" ,r-gridbase)
("r-impute" ,r-impute)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-plotrix" ,r-plotrix)
("r-plyr" ,r-plyr)
("r-readr" ,r-readr)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-seqpattern" ,r-seqpattern)))
(home-page "http://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Summary, annotation and visualization of genomic data")
(description
"This package provides a package for summary and annotation of genomic
intervals. Users can visualize and quantify genomic intervals over
pre-defined functional regions, such as promoters, exons, introns, etc. The
genomic intervals represent regions with a defined chromosome position, which
may be associated with a score, such as aligned reads from HT-seq experiments,
TF binding sites, methylation scores, etc. The package can use any tabular
genomic feature data as long as it has minimal information on the locations of
genomic intervals. In addition, it can use BAM or BigWig files as input.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")