gnu: Add genomation.
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
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@ -3912,6 +3912,49 @@ (define-public r-seqpattern
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reference point and sorted by a user defined feature.")
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(license license:gpl3+)))
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(define-public r-genomation
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(package
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(name "r-genomation")
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(version "1.2.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "genomation" version))
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(sha256
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(base32
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"1mzs995snwim13qk9kz4q3nczpnbsy1allwp4whfq0cflg2mndfr"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-data-table" ,r-data-table)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-gridbase" ,r-gridbase)
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("r-impute" ,r-impute)
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("r-iranges" ,r-iranges)
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("r-matrixstats" ,r-matrixstats)
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("r-plotrix" ,r-plotrix)
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("r-plyr" ,r-plyr)
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("r-readr" ,r-readr)
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("r-reshape2" ,r-reshape2)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-seqpattern" ,r-seqpattern)))
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(home-page "http://bioinformatics.mdc-berlin.de/genomation/")
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(synopsis "Summary, annotation and visualization of genomic data")
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(description
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"This package provides a package for summary and annotation of genomic
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intervals. Users can visualize and quantify genomic intervals over
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pre-defined functional regions, such as promoters, exons, introns, etc. The
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genomic intervals represent regions with a defined chromosome position, which
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may be associated with a score, such as aligned reads from HT-seq experiments,
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TF binding sites, methylation scores, etc. The package can use any tabular
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genomic feature data as long as it has minimal information on the locations of
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genomic intervals. In addition, it can use BAM or BigWig files as input.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(package
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(name "r-qtl")
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