gnu: Add biomaRt.
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
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@ -3515,6 +3515,36 @@ (define-public r-annotationdbi
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annotation data packages using SQLite data storage.")
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(license license:artistic2.0)))
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(define-public r-biomart
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(package
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(name "r-biomart")
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(version "2.26.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "biomaRt" version))
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(sha256
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(base32
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"1s709055abj2gd35g6nnk5d2ai5ii09iir270l2xika6pi62gj3f"))))
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(properties
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`((upstream-name . "biomaRt")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-rcurl" ,r-rcurl)
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("r-xml" ,r-xml)))
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(home-page "http://bioconductor.org/packages/biomaRt")
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(synopsis "Interface to BioMart databases")
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(description
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"biomaRt provides an interface to a growing collection of databases
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implementing the @url{BioMart software suite, http://www.biomart.org}. The
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package enables retrieval of large amounts of data in a uniform way without
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the need to know the underlying database schemas or write complex SQL queries.
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Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
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Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
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users direct access to a diverse set of data and enable a wide range of
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powerful online queries from gene annotation to database mining.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(package
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(name "r-qtl")
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