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Author SHA1 Message Date
Bruno Victal 4d2e35ebf8
gnu: Add nginx-module-vts. 
Depends on nginx http_stub_status_module.

* gnu/packages/web.scm (nginx-module-vts): New variable.
(nginx)[arguments]: Add "--with-http_stub_status_module" to #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-26 11:11:18 +01:00
Ludovic Courtès fed3953d70
inferior: Use 'spawn' on Guile 3.0.9+. 
* guix/inferior.scm (open-bidirectional-pipe): When 'spawn' is defined,
use it instead of 'primitive-fork'.
 2023-01-26 11:11:18 +01:00
Efraim Flashner 0d22ea8282
gnu: poke: Disable static library. 
* gnu/packages/engineering.scm (poke)[arguments]: Adjust configure-flags
to skip the static library.
 2023-01-26 10:55:52 +02:00
Efraim Flashner 4e9c737b30
gnu: poke: Update to 3.0. 
* gnu/packages/engineering.scm (poke): Update to 3.0.
 2023-01-26 10:39:00 +02:00
Tor-björn Claesson a84ceaa8b2
gnu: gdcm: Add documentation. 
* gnu/packages/bioinformatics.scm (gdcm)[outputs]: New field.
[arguments]: Add #:phases.  Augment #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-25 23:50:42 +01:00
Tor-björn Claesson 56551281a5
gnu: gdcm: Ignore 3 failing tests. 
* gnu/packages/bioinformatics.scm (gdcm)[arguments]: Skip three more
failing tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-25 23:50:42 +01:00
Ludovic Courtès 1622f4337c
gnu: guix: Update to ebcb5c8. 
* gnu/packages/package-management.scm (guix): Update to ebcb5c8.
 2023-01-25 23:50:42 +01:00
Ludovic Courtès ebcb5c8e12
tests: Do not try to create "$HOME/.config". 
Previously this test would fail when HOME=/homeless-shelter and said
directory cannot be created.

* tests/guix-refresh.sh: Pass '--keyring' together with '-u'.
 2023-01-25 22:53:20 +01:00
Ludovic Courtès 852908d24d
ui: Add "error-reporting wrapper" for 'mkdir'. 
* guix/ui.scm <top level>: Change 'mkdir' to use an error-reporting
wrapper.
 2023-01-25 22:53:20 +01:00
Leo Famulari 968b882f55
gnu: linux-libre 4.14: Update to 4.14.304. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.304.
(linux-libre-4.14-pristine-source): Update hash.
 2023-01-25 13:36:37 -05:00
Leo Famulari ff513d41d3
gnu: linux-libre 4.19: Update to 4.19.271. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.271.
(linux-libre-4.19-pristine-source): Update hash.
 2023-01-25 13:36:37 -05:00
Leo Famulari 31b289f04a
gnu: linux-libre 5.4: Update to 5.4.230. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.230.
(linux-libre-5.4-pristine-source): Update hash.
 2023-01-25 13:36:37 -05:00
Leo Famulari c608ccbae8
gnu: linux-libre 5.10: Update to 5.10.165. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.165.
(linux-libre-5.10-pristine-source): Update hash.
 2023-01-25 13:36:36 -05:00
Leo Famulari 514ef8d7ae
gnu: linux-libre 5.15: Update to 5.15.90. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.90.
(linux-libre-5.15-pristine-source): Update hash.
 2023-01-25 13:36:36 -05:00
Leo Famulari 3ae39911d3
gnu: linux-libre: Update to 6.1.8. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.8.
(linux-libre-6.1-pristine-source): Update hash.
 2023-01-25 13:36:33 -05:00
Cayetano Santos 50aa7cf08b
gnu: emacs-helm-bibtex: Update to 2.0.1-1.8ebf50d. 
* gnu/packages/emacs-xyz.scm (emacs-helm-bibtex): Update to 2.0.1-1.8ebf50d.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-25 19:09:43 +01:00
John Kehayias a7557329d9
gnu: emacs-mu4e-alert: Update to 1.0-0.3c9af8c. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-alert): Update to 1.0-0.3c9af8c.
[source]: Switch to maintained fork.
[propagated-inputs]: Reorder alphabetically.
[home-page]: Ditto.
[synopsis]: Update to match main uses of package.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

Original repository is no longer maintained and MELPA has switched to an
active fork, required for compatibility with recent versions of mu4e.  See
<https://github.com/melpa/melpa/pull/7927>.
 2023-01-25 18:58:18 +01:00
Cayetano Santos d8d37b98e9
gnu: Add emacs-helm-themes. 
* gnu/packages/emacs-xyz.scm (emacs-helm-themes): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-25 18:53:47 +01:00
Cayetano Santos 035c10dd47
gnu: Add emacs-paradox. 
* gnu/packages/emacs-xyz.scm (emacs-paradox): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-25 18:50:20 +01:00
Nicolas Graves f6286812ec
gnu: emacs-smartparens: Update to 1.11.0-0.7afd647. 
* gnu/packages/emacs-xyz.scm: Update to 1.11.0-0.7afd647.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-25 18:41:59 +01:00
Nicolas Graves 3f58362618
gnu: emacs-origami-el: Add patch to fix cl package deprecation. 
* gnu/packages/emacs-xyz.scm (emacs-origami-el):
[source] Add patch to fix cl package deprecation.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-25 18:41:59 +01:00
Tobias Geerinckx-Rice 7794eeac76
gnu: guile-gnutls: Use gnutls-latest consistently. 
* gnu/packages/tls.scm (guile-gnutls)[native-inputs]: Substitute
gnutls-latest for gnutls.

Reported by jackhill in #guix.
 2023-01-22 01:00:00 +01:00
Ricardo Wurmus 9518c61e70
gnu: Add jack-example-tools. 
* gnu/packages/audio.scm (jack-example-tools): New variable.
 2023-01-25 18:29:45 +01:00
Ricardo Wurmus d1f9519c00
gnu: jack-1: Update comment to recommend use of jack-2. 
* gnu/packages/audio.scm (jack-1, jack-2): Update comments.
 2023-01-25 18:29:45 +01:00
Ludovic Courtès cb141aaf67
gnu: texinfo: Update to 7.0.2. 
* gnu/packages/texinfo.scm (texinfo-7): Update to 7.0.2.
 2023-01-25 18:14:42 +01:00
Ludovic Courtès 8b2721de6a
packages: Adjust 'generate-package-cache' for Guile 3.0.9. 
* gnu/packages.scm (generate-package-cache): Adjust for Guile 3.0.9.
 2023-01-25 18:14:42 +01:00
Nicolas Goaziou bd55412fc2
gnu: emacs-compat: Update to 29.1.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.3.1.
 2023-01-25 17:31:19 +01:00
Nicolas Goaziou 378fcecb29
gnu: emacs-relint: Update to 1.21. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.21.
 2023-01-25 17:31:18 +01:00
Nicolas Goaziou a8869a8f1f
gnu: emacs-project: Update to 0.9.5. 
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.9.5.
 2023-01-25 17:31:18 +01:00
Tobias Geerinckx-Rice 68b6f7a2b4
gnu: jalv: Update to 1.6.8. 
* gnu/packages/audio.scm (jalv): Update to 1.6.8.
[build-system]: Use Meson.
[arguments]: Add a new 'build-PIC phase.
 2023-01-22 01:00:00 +01:00
Tobias Geerinckx-Rice 880d2b9e31
gnu: iir: Update to 1.9.4. 
* gnu/packages/audio.scm (iir): Update to 1.9.4.
 2023-01-22 01:00:00 +01:00
Tobias Geerinckx-Rice a166edbf93
gnu: bind: Update to 9.16.37 [security fixes]. 
This release contains fixes for CVE-2022-3094, CVE-2022-3736,
and CVE-2022-3924.

* gnu/packages/dns.scm (isc-bind): Update to 9.16.37.
 2023-01-22 01:00:00 +01:00
Ricardo Wurmus 0d713e0140
gnu: Add python-slamdunk. 
* gnu/packages/bioinformatics.scm (python-slamdunk): New variable.
 2023-01-25 15:24:48 +01:00
Guillaume Le Vaillant ba1b61a72d
gnu: txr: Update to 284. 
* gnu/packages/lisp.scm (txr): Update to 284.
 2023-01-25 10:51:26 +01:00
Paul A. Patience b0df8de60f
gnu: Add cl-clingon. 
* gnu/packages/lisp-xyz.scm (sbcl-clingon, cl-clingon, ecl-clingon): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Paul A. Patience 0b9aea07d2
gnu: Add cl-trivial-octet-streams. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-octet-streams,
  cl-trivial-octet-streams, ecl-trivial-octet-streams): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Paul A. Patience 9cebf247e7
gnu: cl-coalton: Update to 0.0.1-3.ba75806. 
* gnu/packages/lisp-xyz.scm (sbcl-coalton): Update to 0.0.1-3.ba75806.
  [source]: Add cl- prefix to file-name.
  [inputs]: Remove sbcl-global-vars, sbcl-serapeum and sbcl-trivia, and
  add sbcl-split-sequence and sbcl-trivial-garbage.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Efraim Flashner b7bff3a76f
gnu: diffoscope: Replace cdrtools with cdrkit-libre. 
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Remove
cdrtools. Add cdrkit-libre.
 2023-01-25 09:46:37 +02:00
Efraim Flashner e71dc64e23
gnu: diffoscope: Use newer llvm. 
* gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch.
[native-inputs]: Replace llvm-9 with llvm.
* gnu/packages/patches/diffoscope-fix-llvm-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-01-25 09:45:30 +02:00
Mădălin Ionel Patrașcu 718223c58c
gnu: Add python-phylophlan. 
* gnu/packages/bioinformatics.scm (python-phylophlan): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-01-25 00:22:53 +01:00
Mădălin Ionel Patrașcu ed56d2a1c2
gnu: Add python-hclust2. 
* gnu/packages/bioinformatics.scm (python-hclust2): New variable.
 2023-01-25 00:22:53 +01:00
Mădălin Ionel Patrașcu 47839a9ed6
gnu: Add python-cmseq. 
* gnu/packages/bioinformatics.scm (python-cmseq): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-01-25 00:22:53 +01:00
Ricardo Wurmus 9558da5bb4
gnu: Add python-bcbio-gff/biopython-1.73. 
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): New variable.
 2023-01-25 00:22:53 +01:00
Ricardo Wurmus 45f2d7eb90
gnu: Add emacs-malyon. 
* gnu/packages/emacs-xyz.scm (emacs-malyon): New variable.
 2023-01-25 00:22:53 +01:00
Sughosha dfcd913578
gnu: Add synthpod. 
* gnu/packages/music.scm (synthpod): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-25 00:22:53 +01:00
Maxim Cournoyer f9c151b936
gnu: rpm: Update to 4.18.0. 
* gnu/packages/package-management.scm (rpm): Update to 4.18.0.
[arguments]: Improve robustness of fix-lua-check phase.  Delete obsolete
set-nss-library-path phase.
[inputs]: Remove bdb, cpio, nspr, and nss.  Move python to...
[native-inputs]: ... here.
 2023-01-24 16:48:33 -05:00
Bruno Victal f912d5c740
doc: Substitute @deffn usage with @defvar for Scheme variables. 
* doc/guix.texi (Base Services) (Networking Setup)
(Networking Services) (Printing Services) (Desktop Services)
(Sound Services) (Database Services) (Mail Services) (Messaging Services)
(File-Sharing Services) (Web Services) (DNS Services)
(Power Management Services) (Virtualization Services) (Linux Services)
(Miscellaneous Services): Substitute @deffn usage with @defvar for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:33 +01:00
Bruno Victal f88e855f9f
doc: Use @defvar instead of @defvr for Scheme variables. 
* doc/guix.texi (Build Systems) (Search Paths) (The Store)
(The Store Monad) (File Systems) (Mapped Devices) (User Accounts)
(Locales) (Base Services) (Scheduled Job Execution) (Log Rotation)
(Networking Setup) (Networking Services) (Unattended Upgrades)
(X Window) (Desktop Services) (Database Services) (Messaging Services)
(Kerberos Services) (Web Services) (Certificate Services) (VPN Services)
(Network File System) (Samba Services) (Power Management Services)
(Audio Services) (Virtualization Services) (Linux Services) (Hurd Services)
(Miscellaneous Services) (Setuid Programs) (Name Service Switch)
(Initial RAM Disk) (Service Reference) (Shepherd Services)
(Essential Home Services) (Mcron Home Service)
(Power Management Home Services) (Shepherd Home Service) (Secure Shell)
(Desktop Home Services) (Guix Home Services) (Supported Platforms)
(Instantiate an Image) (image-type Reference): Use @defvar instead of @defvr for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:02 +01:00
Bruno Victal d2454e91b3
doc: Fix incorrect use of @defvar. 
* doc/guix.texi (Monitoring Services) (VNC Services)
(Samba Services) (Game Services) (PAM Mount Service)
(Guix Services): Fix incorrect use of @defvar.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:49:45 +01:00
Ludovic Courtès 5aef6a55a2
doc: Document the 'release-monitoring-url' package property. 
* doc/guix.texi (Invoking guix refresh): Mention the
'release-monitoring-url' property.
 2023-01-23 23:23:08 +01:00