Commit Graph

344 Commits

Author SHA1 Message Date
Maxim Cournoyer 74009c4cf0
guix-install.sh: Exit early if Guix is already installed.
* etc/guix-install.sh (sys_create_store): Move the check & exit before The
Guix binary archive is unpacked.  Re-indent tar extraction command.
2021-05-05 11:01:07 -04:00
Maxim Cournoyer 5b0ce3393b
guix-install.sh: Propose automatically fetching OpenPGP keys.
Via, for example, yes | ./guix-install.sh.

* etc/guix-install.sh (prompt_yes_no): New procedure.
(chk_gpg_keyring, sys_authorize_build_farms): Use it.
2021-05-05 11:01:07 -04:00
Maxim Cournoyer e61fe664a4
guix-install.sh: Please the shellcheck linter.
* etc/guix-install.sh <FUNCNAME>: Explicitly refer to the first item of the
FUNCNAME array.
(ROOT_HOME): Replace variable by ~root directly; manually expanding it via
echo was not necessary.
(chk_gpg_keyring): Use an if branch for the exit to avoid a warning about
expression precedence.
(chk_term) <ansi_term>: Remove unused variable.
(guix_get_bin) <wget, gpg>: Test the commands directly.  Use an array for the
wget arguments, which can then be properly expanded.
(sys_create_store): Disable SC1090 for the source command, as we don't care
about following the sourced script.
<_msg>: Reuse the GUIX_PROFILE variable in the message.
(sys_create_build_user) <getent>: Test the command directly.
2021-05-05 11:01:06 -04:00
Ricardo Wurmus 570b3d32b9
etc: Break long lines in commit messages.
* etc/committer.scm.in (break-string): New procedure.
(change-commit-message): Use it.
2021-05-04 11:52:23 +02:00
Maxim Cournoyer e64af2060e
guix-install.sh: Add support for more than one signing key.
The forthcoming 1.3.0 release will be signed with my personal GnuPG key; the
installation script needs to tell users how to fetch it.

* etc/guix-install.sh (OPENPGP_SIGNING_KEY_ID): Remove variable.
(GPG_SIGNING_KEYS): New associative array.
(chk_gpg_keyring): Process all the keys contained in the above array.
(main) <GUIX_BINARY_FILE_NAME>: Double quote variable.
2021-05-01 01:24:16 -04:00
Maxim Cournoyer bf1628038c
guix-install.sh: Ensure GUIX_BINARY_FILE_NAME is an absolute path.
This is necessary as the directory context is changed in the script, breaking
the use of a relative path.

* etc/guix-install.sh (main) <GUIX_BINARY_FILE_NAME>: Resolve its absolute
path via the 'realpath' command.
2021-05-01 01:23:08 -04:00
Maxim Cournoyer 38aab0ea8b
guix-install.sh: Allow overriding the Guix binary source.
This is useful for example for testing release candidates not yet uploaded to
the FTP, or for testing manually downloaded images from the CI.

* etc/guix-install.sh (main)[GUIX_BINARY_FILE_NAME]: When this variable is
defined, use it as the file name of a Guix binary, instead of automatically
retrieving the latest archive from the FTP.
2021-05-01 01:23:02 -04:00
Maxim Cournoyer 185709221d
guix-install.sh: Add support for more than one signing key.
The forthcoming 1.3.0 release will be signed with my personal GnuPG key; the
installation script need to tell users how fetch it.

* etc/guix-install.sh (OPENPGP_SIGNING_KEY_ID): Remove variable.
(GPG_SIGNING_KEYS): New associative array.
(chk_gpg_keyring): Process all the keys contained in the above array.
(main) <GUIX_BINARY_FILE_NAME>: Double quote variable.
2021-05-01 01:03:18 -04:00
Maxim Cournoyer 8214e70fa8
guix-install.sh: Ensure GUIX_BINARY_FILE_NAME is an absolute path.
This is necessary as the directory context is changed in the script, breaking
the use of a relative path.

* etc/guix-install.sh (main) <GUIX_BINARY_FILE_NAME>: Resolve its absolute
path via the 'realpath' command.
2021-04-29 14:09:22 -04:00
Ludovic Courtès 42ac8da474
maint: Require "emacs-no-x" instead of "emacs" on armhf-linux.
* etc/release-manifest.scm (%base-packages/armhf): New variable.
(%base-manifest): Use it.
2021-04-27 22:22:15 +02:00
Ludovic Courtès a363e430d6
maint: Don't require 'bootstrap-tarballs' for powerpc64le-linux.
* etc/release-manifest.scm (%base-manifest): Special-case
"powerpc64le-linux".
2021-04-27 17:53:43 +02:00
Ludovic Courtès c59cc2383d
import: Remove Nix importer.
This importer has suffered from bitrot and no longer works with current
Nix and Nixpkgs.  See <https://bugs.gnu.org/32339> and
<https://bugs.gnu.org/36255>.

* guix/import/snix.scm, guix/scripts/import/nix.scm,
tests/snix.scm: Remove.
* Makefile.am (MODULES, SCM_TESTS): Remove them.
* guix/scripts/import.scm (importers): Remove "nix".
* build-aux/test-env.in: Remove NIXPKGS variable.
* configure.ac: Remove '--with-nixpkgs' option.
* doc/guix.texi (Invoking guix import): Remove bit about "guix import
nix".
* etc/completion/fish/guix.fish: Likewise.
2021-04-25 14:34:09 +02:00
Maxim Cournoyer 51f95d4e64
guix-install.sh: Allow overriding the Guix binary source.
This is useful for example for testing release candidates not yet uploaded to
the FTP, or for testing manually downloaded images from the CI.

* etc/guix-install.sh (main)[GUIX_BINARY_FILE_NAME]: When this variable is
defined, use it as the file name of a Guix binary, instead of automatically
retrieving the latest archive from the FTP.
2021-04-24 10:32:40 -04:00
Ludovic Courtès d95168321f
import: Remove Nix importer.
This importer has suffered from bitrot and no longer works with current
Nix and Nixpkgs.  See <https://bugs.gnu.org/32339> and
<https://bugs.gnu.org/36255>.

* guix/import/snix.scm, guix/scripts/import/nix.scm,
tests/snix.scm: Remove.
* Makefile.am (MODULES, SCM_TESTS): Remove them.
* guix/scripts/import.scm (importers): Remove "nix".
* build-aux/test-env.in: Remove NIXPKGS variable.
* configure.ac: Remove '--with-nixpkgs' option.
* doc/guix.texi (Invoking guix import): Remove bit about "guix import
nix".
* etc/completion/fish/guix.fish: Likewise.
2021-04-20 12:13:16 +02:00
Leo Famulari 8e214c53a4
guix-install.sh: Add the build users to the 'kvm' group.
Fixes <https://bugs.gnu.org/42129>.

* etc/guix-install.sh (sys_create_build_user): If a 'kvm' group exists,
add it to the guixbuilders' lists of supplementary groups.
2021-04-14 15:32:51 -04:00
Morgan Smith a6ac141ebb
etc/committer: Add missing newline.
* etc/committer.scm.in (main): Add newline to message.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-12 21:42:15 +02:00
Morgan Smith d375eddda0
etc/committer: Use git plumbing instead of porcelain.
* etc/committer.scm.in (diff-info): Use "git diff-files" instead of "git diff".
(old-sexp): Use "git cat-file" instead of "git show".

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-12 21:42:15 +02:00
Ricardo Wurmus c762df5478
etc/committer: Disable diff colors.
Reported by: morgansmith on IRC.

* etc/committer.scm.in (diff-info): Invoke "git diff" with "--no-color".
2021-04-08 17:12:06 +02:00
Ricardo Wurmus 83991a34d5
etc/committer: Recompute hunks before processing changes.
* etc/committer.scm.in (main): Re-evaluate diff-info after processing
insertions.
2021-04-08 03:10:14 +02:00
Ricardo Wurmus 43fb6b765d
etc/committer: Record minimal context for hunks to avoid problems.
With zero context new definitions would be applied to the wrong location in
the file.  More context lines lead to larger hunks, though, so we use just one
line of context.

* etc/committer.scm.in (diff-info): Invoke "git diff" with one line of
context.
[info]: Merge line break and first line.
(lines-to-first-change): New procedure.
(old-sexp, new-sexp): Use it.
2021-04-08 03:10:14 +02:00
Ricardo Wurmus 56270c1275
etc/committer: Define delay duration as a variable.
* etc/committer.scm.in (%delay): New variable.
(main): Use it.
2021-04-08 03:10:14 +02:00
Ricardo Wurmus c8c3afe848
etc/committer: Handle package additions.
* etc/committer.scm.in (<hunk>)[diff]: Rename this field...
[diff-lines]: ...to this.
[definition?]: New field.
(hunk->patch): Join diff lines.
(diff-info): Do not join diff lines; record whether a hunk is a new
definition.
(commit-message): Rename this procedure...
(change-commit-message): ...to this.
(add-commit-message): New procedure.
(main): Handle new package definitions before changes.
2021-04-08 03:10:13 +02:00
Florian Pelz 86617c92c6
news: Add 'de' translation.
* etc/news.scm: Add German translation of user activation entry.
2021-04-04 07:47:12 +02:00
Ludovic Courtès 3b6247ba6d
news: Clarify time window for account activation vulnerability.
* etc/news.scm: Tweak wording about skeleton files.
2021-04-03 22:19:28 +02:00
Ludovic Courtès c9960ad67c
news: Recommend upgrade for account activation vulnerability.
* etc/news.scm: Recommend upgrade.
2021-04-03 22:13:28 +02:00
Maxime Devos 72f911bf05
news: Add entry for user account activation vulnerability.
* etc/news.scm: Add entry.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-04-03 22:09:56 +02:00
Florian Pelz 2743a0b28d
news: Add 'de' translation.
* etc/news.scm: Add German translation of POWER9 entry.
2021-04-01 19:51:32 +02:00
Ludovic Courtès f73b4ecb0c
news: Add 'fr' translation.
* etc/news.scm: Add French translation of POWER9 entry.
2021-03-31 17:18:14 +02:00
Chris Marusich 0374617920
news: Add entry announcing powerpc64le-linux support.
* etc/news.scm: Add entry.
2021-03-30 23:02:17 -07:00
Chris Marusich a16eb6c5f9
Add powerpc64le-linux as a supported Guix architecture.
This makes powerpc64le-linux a supported architecture for Guix, but not for
Guix System.

* Makefile.am (SUPPORTED_SYSTEMS): Add an entry for powerpc64le-linux.
* etc/guix-install.sh (chk_sys_arch): Same.
* guix/packages.scm (%supported-systems): Same.
* m4/guix.m4 (GUIX_ASSERT_SUPPORTED_SYSTEM): Same.
* tests/guix-build.sh (all_systems): Same.
2021-03-23 23:19:57 -07:00
Florian Pelz 5dd33960bc
news: Add ‘de’ translation.
* etc/news.scm (channel-news): Add German translation.
2021-03-18 22:33:53 +00:00
Tobias Geerinckx-Rice 1cf49786f0
news: Add ‘nl’ translation.
* etc/news.scm (channel-news): Add a Dutch translation.
2021-03-18 22:30:46 +01:00
Tobias Geerinckx-Rice 79f9091b0f
news: Update erratum for '--keep-failed' vulnerability.
* etc/news.scm: Change commit to behave in a (hopefully) more expected
manner.  Change http:// to https:// URL whilst here.
2021-03-18 22:15:00 +01:00
Tobias Geerinckx-Rice f62633a527
news: Add erratum for '--keep-failed' vulnerability.
* etc/news.scm: Add entry.
2021-03-18 21:52:02 +01:00
Tobias Geerinckx-Rice a12de215e3
news: Fix ‘nl’ typo.
* etc/news.scm (channel-news): This locale's ‘locale’'s ‘lokale’.
2021-03-18 17:47:07 +01:00
Tobias Geerinckx-Rice 6ce80c9008
news: Add ‘nl’ translation.
* etc/news.scm (channel-news): Add a Dutch translation.
2021-03-18 17:08:11 +01:00
Florian Pelz 9783645ee8
news: Add ‘de’ translation. 2021-03-18 14:38:57 +00:00
Ludovic Courtès 1955ef93b7
news: Add entry for '--keep-failed' vulnerability.
* etc/news.scm: Add entry.
2021-03-18 12:34:02 +01:00
Julien Lepiller bf6a1dbae1
news: Add 'fr' translation.
* etc/news.scm: Add missing French translations.
2021-03-17 13:31:43 +01:00
Florian Pelz 9ed2a26d04
news: Add ‘de’ translation. 2021-03-16 13:43:32 +00:00
Maxim Cournoyer 1ea2c82355
news: Add news entry about changes to the QEMU binfmt service.
* etc/news.scm: Add entry.
2021-03-15 18:03:16 -04:00
Florian Pelz 526b5b106e
news: Update copyright.
* etc/news.scm: Add missing copyright header.
2021-03-11 16:23:02 +00:00
Tobias Geerinckx-Rice 8f359cd9ff
news: Add ‘nl’ translation.
* etc/news.scm (channel-news): Add a Dutch translation.
2021-03-11 15:20:50 +01:00
Florian Pelz c6079b0278
news: Add ‘de’ translation. 2021-03-11 13:00:00 +00:00
Ludovic Courtès 2673324efa
news: Add entry for 'guix import go'.
* etc/news.scm: Add entry.
2021-03-10 18:03:34 +01:00
Mathieu Othacehe 76bea3f8bc
ci: Remove hydra support.
This removes hydra support to use Cuirass as the only continuous integration
system.

* build-aux/hydra/gnu-system.scm: Remove it.
* build-aux/hydra/guix-modular.scm: Ditto.
* build-aux/hydra/guix.scm: Ditto.
* build-aux/cuirass/hydra-to-cuirass.scm: Ditto.
* Makefile.am (EXTRA_DIST): Update it.
(hydra-jobs.scm): Remove it.
(cuirass-jobs.scm): Update it.
* build-aux/hydra/evaluate.scm: Move it to ...
* build-aux/cuirass/evaluate.scm: ... here.
* build-aux/cuirass/guix-modular.scm: Remove it.
* build-aux/cuirass/gnu-system.scm: Ditto.
* guix/packages.scm (%hydra-supported-systems): Rename it to ...
(%cuirass-supported-systems): ... this variable.
* build-aux/check-final-inputs-self-contained: Adapt it.
* etc/release-manifest.scm: Ditto.
* gnu/ci.scm (package->alist): Remove it.
(derivation->job): New procedure.
(package-job, package-cross-job, cross-jobs, image-jobs, system-test-jobs,
tarball-jobs): Use it.
(guix-jobs): New procedure.
(hydra-jobs): Rename it to ...
(cuirass-jobs): ... this procedure.
2021-03-10 08:49:48 +01:00
Florian Pelz d6547b1e40
news: Add ‘de’ translation. 2021-03-02 09:58:13 +00:00
Tobias Geerinckx-Rice 20b5cf8304
news: Add ‘nl’ translation.
* etc/news.scm: Add a Dutch translation.
2021-02-28 22:41:10 +01:00
Leo Famulari a78058a80b
news: Add entry for the linux-libre 5.11 update.
* etc/news.scm: Add entry.
2021-02-28 14:58:03 -05:00
Zhu Zihao a4458eb0ea
news: Add 'zh' translation.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-22 12:07:45 +01:00
Florian Pelz fb2498aaa1
news: Add ‘de’ translation. 2021-02-18 10:48:37 +00:00
Mathieu Othacehe 3acf140736
news: Add entry for "guix system image".
* etc/news.scm: New entry.
2021-02-17 13:30:30 +01:00
Mathieu Othacehe ee2a5da80a
scripts: system: Remove 'vm-image' command.
Remove the 'vm-image' command that has been superseded by the 'image'
command.

* gnu/system/vm.scm (system-qemu-image): Remove it.
* guix/scripts/system.scm (system-derivation-for-action): Mark 'vm-image'
command as deprecated and use the image API to produce the VM image.
(perform-action, show-help): Adapt accordingly.
* tests/guix-system.sh: Ditto.
* doc/guix.texi (Invoking guix system,
Running Guix in a VM): Ditto.
* etc/completion/fish/guix.fish: Ditto.
* etc/completion/zsh/_guix: Ditto.
2021-02-17 10:52:28 +01:00
Ludovic Courtès 2972287490
news: Add 'fr' translation. 2021-02-09 23:38:33 +01:00
Ludovic Courtès e342f89b4c
etc: 'guix-publish.service' depends on 'guix-daemon.service'.
Reported by Dimitri Delabroye <dimitri.delabroye@inria.fr>.

* etc/guix-publish.service.in (Requires, PartOf, After): New fields.
2021-02-09 23:38:33 +01:00
Florian Pelz 5e01f68a93
news: Add ‘de’ translation. 2021-02-09 10:16:49 +00:00
Ludovic Courtès b421b2f66e
news: Add news entry for local privilege escalation.
* etc/news.scm: Add entry.
2021-02-09 10:09:09 +01:00
Florian Pelz 786a8c5803
news: Add ‘de’ translation. 2021-02-03 16:49:59 +00:00
Ludovic Courtès 15078567c1
news: Add entry for '--export-manifest' and '--export-channels'.
* etc/news.scm: Add entry.
2021-02-01 17:58:05 +01:00
Florian Pelz 4fce867ddf
news: Add ‘de’ translation. 2021-01-21 15:02:41 +00:00
Ludovic Courtès ff34f8a693
news: Add entry for '--with-latest'.
* etc/news.scm: Add entry.
2021-01-19 18:14:43 +01:00
Florian Pelz edd989d57a
news: Add ‘de’ translation. 2021-01-16 23:26:16 +00:00
Ludovic Courtès 4c21676698
news: Add entry for zstd support.
* etc/news.scm: Add entry.
2021-01-14 09:49:07 +01:00
Jakub Kądziołka 9d34b04f40
/etc/profile.d/guix.sh: Add guix pull profile even when absent
* etc/guix-install.sh (sys_create_init_profile): Set PATH and INFOPATH
even when $_GUIX_PROFILE does not exist.

After initial installation on a foreign distro, the guix pull profile
won't be present in path. This means that the first guix pull won't take
effect until the shell is restarted.

~/.guix-profile cannot be pre-loaded like this as the relevant paths are
stored in ~/.guix-profile/etc/profile, which simply won't exist.
However, guix package will output a relevant hint that instructs the
user to reload the profile, so this isn't a problem.
2021-01-03 17:01:26 +01:00
Florian Pelz 551167d008
news: Add ‘de’ translation. 2020-12-27 17:37:44 +00:00
Ludovic Courtès d21f251a35
news: Add entry for '--with-patch'.
* etc/news.scm: Add entry.
2020-12-27 17:24:07 +01:00
Morgan Smith d6b0d219c6
etc: snippets: Add new build systems to package snippet.
* etc/snippets/scheme-mode/guix-package: Add the following as possibilities
for the build-system field:

clojure-build-system
copy-build-system
dune-build-system
guile-build-system
julia-build-system
linux-module-build-system
maven-build-system
node-build-system
qt-build-system
rakudo-build-system

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-23 17:30:14 +01:00
Vincent Legoll d2532317d1
guix-install.sh: Add variable quoting and curly-bracketing.
* etc/guix-install.sh (guix_get_bin)[dl_path]: Add variable quoting and
curly-bracketing.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-18 12:21:25 +00:00
Vincent Legoll 1f4e878fc4
guix-install.sh: Adjust variable use in guix_get_bin_list().
* etc/guix-install.sh (guix_get_bin_list)[BIN_VER]: Add curly-brackets,
[latest_ver]: Likewise & add explicit array zero-indexing.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-18 12:21:15 +00:00
Vincent Legoll b4a1252b71
guix-install.sh: Add variable quoting in sys_make_guix_available.
* etc/guix-install.sh (sys_make_guix_available): Add variable quoting.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-18 12:21:11 +00:00
Vincent Legoll 7c16406809
guix-install.sh: Replace tabs with spaces.
Almost the entire file is indented with spaces, a few tabs slipped in, clean
them up.

* etc/guix-install.sh(chk_sys_arch): Replace tabs with spaces.
(sys_enable_guix_daemon): Likewise.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-18 12:20:59 +00:00
Leo Famulari 80ebcdd100
maint: Only run `make authenticate` when pushing commits.
* etc/git/pre-push: Exit early when deleting a branch.
2020-12-14 12:15:06 -05:00
Miguel Ángel Arruga Vivas 6718ce446c
news: Add 'es' translation. 2020-12-12 02:27:58 +01:00
Marius Bakke d677f3d623
etc: Add more SELinux permissions for the daemon.
* etc/guix-daemon.cil.in (guix_daemon): Permit file write, getattr, link and
unlink for the guix_daemon_exec_t type.
2020-12-10 23:48:42 +01:00
Ludovic Courtès 611ae310f4
bash completion: Complete file names after '-f' and '-l'.
* etc/completion/bash/guix (_guix_is_dash_f, _guix_is_dash_l): New
functions.
(_guix_complete): Complete file names after 'guix package -f', 'guix
build -f', and 'guix environment -l'.
2020-12-04 23:45:08 +01:00
Nicolas Goaziou 39e8bc2ab8
etc: snippets: Fix name extraction.
* etc/snippets/text-mode/guix-commit-message-add-package: Fix name
extraction. This is a follow-up to 988a49c78e.
2020-12-04 18:19:39 +01:00
Nicolas Goaziou 988a49c78e
etc: snippets: Fix name extraction.
* etc/snippets/text-mode/guix-commit-message-update-package: Since git commit
mode is not derived from any Lisp mode, so-called sexp or symbols do not
include the period character.  As a consequence, names including versions are
not properly extracted. Also use more idiomatic (goto-char (point-min))
instead of (beginning-of-buffer).
2020-12-04 17:09:38 +01:00
Nicolas Goaziou 2c0b331c9a
news: Fix typo.
* etc/news.scm (version): Add missing @option macro in French translation.
2020-12-01 09:36:44 +01:00
Florian Pelz 79613ec8fc
news: Add ‘de’ translation. 2020-11-29 19:33:36 +00:00
Mathieu Othacehe 7a584b0e56
news: Add entry for substitute servers discovery.
* etc/news.scm: Add entry.
2020-11-29 16:57:19 +01:00
Marius Bakke 1807632393
etc: Add more SELinux permissions for the daemon.
* etc/guix-daemon.cil.in (guix_daemon): Permit more operations required for
various build jobs.
2020-11-27 21:33:59 +01:00
Florian Pelz 1485736b94
news: Add ‘de’ translation. 2020-11-26 12:34:12 +00:00
Marius Bakke 402ebffe19
etc: Add more SELinux permissions for the daemon.
* etc/guix-daemon.cil.in (guix_daemon): Permit file appending, setattr,
read/write UDP sockets, access to tmpfs and hugetlbfs, and connecting to
PostgreSQL.
2020-11-26 00:31:47 +01:00
Ludovic Courtès ae902124c1
news: Add entry for LVM support.
* etc/news.scm: Add entry.
2020-11-26 00:06:42 +01:00
Marius Bakke d64e0261d0
etc: Add more SELinux permissions for the daemon.
This is needed for some package test suites.

* etc/guix-daemon.cil.in (guix_daemon): Permit unix_dgram_socket operations.
2020-11-25 23:24:52 +01:00
Pierre Neidhardt 402f1104e5
etc: snippets: Fix "gnu: Add ..." name when prefilling Common Lisp commits messages.
* etc/snippets/text-mode/guix-commit-message-add-cl-package: Fix name and
simplify the "New variables" line.
2020-11-25 10:45:42 +01:00
Pierre Neidhardt add4749917
etc: snippets: Prefill Common Lisp package names.
* etc/snippets/text-mode/guix-commit-message-add-cl-package: New file.
2020-11-23 11:14:22 +01:00
Pierre Neidhardt 8307b8f184
etc: snippets: Fix package name extraction.
* etc/snippets/text-mode/guix-commit-message-add-package: Properly extract
name when the diff contains a very short `define-public ...` above the actual
new package.  This can happen when the above package is a small inherited
definition or cl/ecl package.
2020-11-23 11:13:58 +01:00
Maxim Cournoyer 129b9b16d9
Merge remote-tracking branch 'origin/version-1.2.0' into master
Conflicts:
	gnu/packages/bioinformatics.scm

The python-pysam package fixed in master was kept instead of the update done
in the version-1.2.0 branch.
2020-11-17 18:00:28 -05:00
Daniel Brooks 8311e4e1d1
guix-install.sh: don't throw away release candidates when picking the latest version
* etc/guix-install.sh (guix_get_bin_list): modify regexes to allow rcN syntax

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-15 22:31:20 +01:00
Daniel Brooks 62343288ef
etc: Updates for the guix-daemon SELinux policy.
* etc/guix-daemon.cil.in (guix_daemon): Specify more permissions for
guix-daemon to account for daemon updates and newer SELinux.

I can't promise that this is a complete list of everything that guix-daemon
needs, but it's probably most of them. It can search for, install, upgrade,
and remove packages, create virtual machines and containers, update itself,
and so on.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-11-15 16:08:47 +01:00
Ludovic Courtès 19e2898c80
maint: Reduce the package set for "i586-gnu".
* etc/release-manifest.scm (%base-packages/hurd): New variable.
(%base-manifest): Use it when SYSTEM is "i586-gnu".
2020-11-08 16:58:30 +01:00
Florian Pelz 02c3c51e0c
news: Add ‘de’ translation.
* etc/news.scm: Add ‘de’ translation.
2020-10-22 08:52:41 +00:00
Miguel Ángel Arruga Vivas d018559063
news: Add 'es' translation. 2020-10-26 15:57:35 +01:00
Ludovic Courtès cedb07965d
news: Add entry for the declarative substitute ACL.
* etc/news.scm: Add entry.
2020-10-25 01:06:34 +02:00
Florian Pelz 14417fc05c
news: Add ‘de’ translation.
* etc/news.scm: Add ‘de’ translation.
2020-10-22 08:22:22 +00:00
Miguel Ángel Arruga Vivas 5fff5dbeec
news: Add 'es' translation. 2020-10-20 21:38:03 +02:00
Ludovic Courtès 5f92f51955
news: Add entry for '--with-debug-info'.
* etc/news.scm: Add entry.
2020-10-20 16:31:01 +02:00
zimoun b2683a2bed
guix-install.sh: Check the service 'nscd' and suggest it.
Fixes <https://bugs.gnu.org/43744>.

* etc/guix-install.sh (chk_sys_nscd): New function to check if the service
'nscd is running, otherwise suggest to install distribution-wide.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-16 15:00:50 +02:00
zimoun b3fba5ef04
guix-install.sh: Add symbolic links for supported shell completions.
Fixes <https://bugs.gnu.org/43744>.

* etc/guix-install.sh (sys_create_shell_completion): New function to add
system wide all the symlinks for supported shell completions.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-16 15:00:50 +02:00