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Author SHA1 Message Date
Ricardo Wurmus ba54cb61ec
gnu: r-rmarkdown: Update to 1.18. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.18.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus bf5b792b0e
gnu: r-matrix: Update to 1.2-18. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-18.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus 6fdf3d5d99
gnu: r-igraph: Update to 1.2.4.2. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.2.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus 28d940961c
gnu: r-rgdal: Update to 1.4-8. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.4-8.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus 7b18e6d000
gnu: r-covr: Update to 3.4.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.4.0.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus 7dcd823978
gnu: r-kohonen: Update to 3.0.10. 
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.10.
[propagated-inputs]: Remove r-mass.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus bb180e8a7a
gnu: r-grimport2: Update to 0.2-0. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.2-0.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus e2448b4b14
gnu: r-grimport: Update to 0.9-3. 
* gnu/packages/cran.scm (r-grimport): Update to 0.9-3.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus 04c3fd85ea
gnu: r-rnifti: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.1.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus ad6ab1a881
gnu: r-emmeans: Update to 1.4.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.3.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus fda807da90
gnu: r-writexl: Update to 1.2. 
* gnu/packages/cran.scm (r-writexl): Update to 1.2.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus efec58e7ff
gnu: r-factominer: Update to 2.0. 
* gnu/packages/cran.scm (r-factominer): Update to 2.0.
[propagated-inputs]: Add r-ggplot2 and ggrepel.
 2019-11-28 10:03:19 +01:00
Oleg Pykhalov 37515553b5
gnu: tome4: Update to 1.6.4. 
* gnu/packages/games.scm (tome4): Update to 1.6.4.
 2019-11-28 08:55:43 +03:00
Leo Famulari 7297ebb287
gnu: Blender: Update to 2.81. 
* gnu/packages/graphics.scm (blender): Update to 2.81.
[inputs]: Add libxi, libxrender, and tbb.
 2019-11-27 21:58:45 -05:00
Pierre Langlois 9943d238e9
gnu: feh: Adapt tests for imlib2 1.6. 
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file.
* gnu/packages/image-viewers.scm (feh)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-11-28 00:33:49 +01:00
Marius Bakke ba5ef9997b
gnu: python-dbus: Update to 1.2.14. 
* gnu/packages/python-xyz.scm (python-dbus): Update to 1.2.14.
(python2-dbus)[arguments]: Remove.
 2019-11-28 00:33:48 +01:00
Marius Bakke e1695f4d58
gnu: whois: Update to 5.5.3. 
* gnu/packages/networking.scm (whois): Update to 5.5.3.
 2019-11-28 00:33:48 +01:00
Marius Bakke fd5ccec796
gnu: bubblewrap: Update to 0.4.0. 
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.4.0.
 2019-11-28 00:33:48 +01:00
Marius Bakke 546c9fa660
gnu: bubblewrap: Update home page. 
* gnu/packages/virtualization.scm (bubblewrap)[source, home-page]: Follow
redirect to.
 2019-11-28 00:33:48 +01:00
Marius Bakke 164d0ad352
gnu: python-xapian-bindings: Sphinx is a native input. 
* gnu/packages/search.scm (python-xapian-bindings)[inputs]: Remove
PYTHON-SPHINX.
[native-inputs]: New field.
 2019-11-28 00:33:48 +01:00
Marius Bakke 7b5a120730
gnu: xapian: Update to 1.4.14. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.14.
 2019-11-28 00:33:48 +01:00
Marius Bakke 60392114ae
gnu: notmuch: Update to 0.29.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.29.3.
 2019-11-28 00:33:47 +01:00
Marius Bakke 38ae96e9c5
gnu: xorg-server: Update to 1.20.6. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.6.
(xorg-server-for-tests): Stay on 1.20.5.
 2019-11-28 00:33:47 +01:00
Marius Bakke ff3375251d
gnu: Use the test-only Xorg variant for tests. 
* gnu/packages/education.scm (gcompris-qt)[native-inputs]: Change XORG-SERVER
to XORG-SERVER-FOR-TESTS.
* gnu/packages/engineering.scm (pcb, qucs, openscad)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (libbonoboui, d-feet, gspell, libdazzle, libhandy)[native-inputs]: Likewise.
* gnu/packages/gnupg.scm (parcimonie)[native-inputs]: Likewise.
* gnu/packages/graphics.scm (opensubdiv, rapicorn)[native-inputs]: Likewise.
* gnu/packages/gtk.scm (gtksourceview-2, gtksourceview)[native-inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kconfig, kcoreaddons, kwidgetsaddons,
kwindowsystem, kdeclarative)[native-inputs]: Likewise.
* gnu/packages/kde-plasma.scm (kscreenlocker)[native-inputs]: Likewise.
* gnu/packages/messaging.scm (gajim)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-seaborn)[native-inputs]: Likewise.
 2019-11-28 00:33:47 +01:00
Ricardo Wurmus dcc7fad001
gnu: r-txtplot: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-txtplot): Move from here...
* gnu/packages/cran.scm (r-txtplot): ...to here.
 2019-11-27 18:36:39 +01:00
Ricardo Wurmus f3640e7395
gnu: Remove obsolete import of R build system module. 
* gnu/packages/maths.scm: Remove import of (guix build-system r).
 2019-11-27 18:29:32 +01:00
zimoun ef7944b94f
gnu: r-subplex: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 682768deb0
gnu: r-pracma: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
Pierre Neidhardt f678cc9c79
gnu: Add glib-with-documentation. 
* gnu/packages/glib.scm (glib-with-documentation): New variable.
(glib)[properties]: Hide package.
 2019-11-27 13:34:22 +01:00
Efraim Flashner 255bb7be0a
gnu: denemo: Move some inputs to native-inputs. 
* gnu/packages/music.scm (denemo)[inputs]: Move intltool, gtk-doc,
libtool ...
[native-inputs]: .. to here.
 2019-11-27 11:33:57 +02:00
Ricardo Wurmus a132276537
gnu: python-seaborn: Disable matrix test. 
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Add phase
"fix-tests".
 2019-11-27 09:58:28 +01:00
Ricardo Wurmus 9e7cb2f1e1
gnu: python-matplotlib: Update to 3.1.2. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.2.
[arguments]: Disable test_backend_webagg and test_constrainedlayout; skip
other tests tagged with "webagg".
 2019-11-27 09:58:28 +01:00
Ricardo Wurmus f9bd82e7a6
gnu: python-seaborn: Add patch to fix tests. 
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add upstream patch to
fix test failures.
 2019-11-27 09:58:28 +01:00
Ludovic Courtès fbecb5cddb
daemon: 'deletePath' uses 'statx' when available. 
* nix/libutil/util.cc (_deletePath) [HAVE_STATX]: Use 'statx'.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès 7738a72186
daemon: GC remove-unused-links phase uses 'statx' when available. 
* config-daemon.ac: Check for 'statx'.
* nix/libstore/gc.cc (LocalStore::removeUnusedLinks) [HAVE_STATX]: Use
'statx' instead of 'lstat'.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès 434138e2f2
substitute: Make '%allow-unauthenticated-substitutes?' public. 
* guix/scripts/substitute.scm (warn-about-missing-authentication): New
procedure.
(%allow-unauthenticated-substitutes?): Turn into a public parameter and
use 'warn-about-missing-authentication'.
(valid-narinfo?): Adjust accordingly.
* tests/substitute.scm (call-with-narinfo): Likewise.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès 7f3bbfaf8e
ui: Adjust SRFI-34 exception handling to Guile 2.9.5. 
* guix/ui.scm (report-load-error, warn-about-load-error)
(read/eval): Match (or 'srfi-34 '%exception) instead of just 'srfi-34 to
match what Guile 2.9.5 does.
 2019-11-27 00:03:03 +01:00
Alexandros Theodotou 7281c8fd7e
gnu: Add helm. 
* gnu/packages/music.scm: (helm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-27 00:03:03 +01:00
Mark H Weaver 778ae9f980
gnu: linux-libre@4.9: Update to 4.9.203. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.203.
(linux-libre-4.9-pristine-source): Update hash.
 2019-11-26 14:38:02 -05:00
Mark H Weaver 93cae7458a
gnu: linux-libre@4.4: Update to 4.4.203. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.203.
(linux-libre-4.4-pristine-source): Update hash.
 2019-11-26 14:37:01 -05:00
Efraim Flashner 67057b1baf
gnu: emacs-shift-number: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-shift-number)[source]: Download
using git-fetch.
 2019-11-26 20:57:33 +02:00
Efraim Flashner 8361231019
gnu: emacs-rsw-elisp: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-rsw-elisp)[source]: Download using
git-fetch.
 2019-11-26 20:56:03 +02:00
Efraim Flashner b495fbfad9
gnu: emacs-helm-mode-manager: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-helm-mode-manager)[source]: Download
using git-fetch.
 2019-11-26 20:53:34 +02:00
Efraim Flashner b8e4626542
gnu: emacs-m-buffer-el: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-m-buffer-el)[source]: Download using
git-fetch.
 2019-11-26 20:51:31 +02:00
Efraim Flashner c75d100858
gnu: emacs-validate: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-validate)[source]: Download using
git-fetch.
 2019-11-26 20:49:55 +02:00
Efraim Flashner 2e1afa2a7c
gnu: emacs-groovy-modes: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-groovy-modes)[source]: Download
using git-fetch.
 2019-11-26 20:48:19 +02:00
Efraim Flashner 7335f4617c
gnu: emacs-pretty-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-pretty-mode)[source]: Download using
git-fetch.
 2019-11-26 20:46:27 +02:00
Efraim Flashner ed1ff94fe2
gnu: emacs-auto-complete: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-auto-complete)[source]: Download
using git-fetch.
 2019-11-26 20:44:58 +02:00