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Author SHA1 Message Date
Ricardo Wurmus 0bc5c20756
gnu: r-effectsize: Update to 0.4.5. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.5.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 3a5b90d0ab
gnu: r-bayestestr: Update to 0.10.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.0.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 0d813e0275
gnu: r-emmeans: Update to 1.6.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.1.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 304d9c5dd3
gnu: r-manipulatewidget: Update to 0.11.0. 
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.0.
[propagated-inputs]: Add r-shinyjs.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 8b459409a9
gnu: r-insight: Update to 0.14.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.14.1.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 6c5543d1d7
gnu: r-rdpack: Update to 2.1.2. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.2.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 27bff67ea9
gnu: r-fansi: Update to 0.5.0. 
* gnu/packages/cran.scm (r-fansi): Update to 0.5.0.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus e6068fe401
gnu: r-zip: Update to 2.2.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.2.0.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus ec1666550d
gnu: r-signal: Update to 0.7-7. 
* gnu/packages/cran.scm (r-signal): Update to 0.7-7.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus c4ca93cec9
gnu: r-tinytex: Update to 0.32. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.32.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 52eaf9d864
gnu: r-fitdistrplus: Update to 1.1-5. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-5.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 05ee34f0de
gnu: r-inline: Update to 0.3.19. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.19.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 375fea067d
gnu: r-extremes: Update to 2.1-1. 
* gnu/packages/cran.scm (r-extremes): Update to 2.1-1.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 8cc146b24a
gnu: r-bisquerna: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:07 +02:00
Marius Bakke 882ec50ca1
gnu: python-django@2.2: Update to 2.2.24 [fixes CVE-2021-33203, CVE-2021-33571]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.24.
 2021-06-02 17:05:55 +02:00
Marius Bakke e17b8d5e3f
gnu: python-django: Update to 3.2.4 [fixes CVE-2021-33203, CVE-2021-33571]. 
* gnu/packages/django.scm (python-django): Update to 3.2.4.
 2021-06-02 17:05:55 +02:00
Ron Nazarov via Guix-patches via 10343994dc
gnu: Add udftools. 
* gnu/packages/file-systems.scm (udftools): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-06-02 15:40:03 +02:00
Tobias Geerinckx-Rice 1bd85824c7
gnu: ispell: Update to 3.4.03. 
* gnu/packages/aspell.scm (ispell): Update to 3.4.03.
 2021-06-02 15:40:03 +02:00
Ricardo Wurmus 011d586c2c
gnu: Add biobambam2. 
* gnu/packages/bioinformatics.scm (biobambam2): New variable.
 2021-06-02 13:54:15 +02:00
Ricardo Wurmus 18e0081045
gnu: Add libmaus2. 
* gnu/packages/bioinformatics.scm (libmaus2): New variable.
 2021-06-02 13:54:15 +02:00
Ricardo Wurmus f01215635a
gnu: r-with-tests: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.0.
 2021-06-02 13:54:15 +02:00
Tobias Geerinckx-Rice 6fee3239b3
gnu: memtester: Update to 4.5.1. 
* gnu/packages/hardware.scm (memtester): Update to 4.5.1.
 2021-06-02 12:53:10 +02:00
Tobias Geerinckx-Rice fa26ca54f9
gnu: osip: Update to 5.2.1. 
* gnu/packages/telephony.scm (osip): Update to 5.2.1.
 2021-06-02 12:53:10 +02:00
Tobias Geerinckx-Rice 6c0a09b341
gnu: retroarch: Update to 1.9.4. 
* gnu/packages/emulators.scm (retroarch): Update to 1.9.4.
 2021-06-02 12:53:09 +02:00
Tobias Geerinckx-Rice 57278dc214
gnu: libavif: Update to 0.9.1. 
* gnu/packages/image.scm (libavif): Update to 0.9.1.
 2021-06-02 12:53:09 +02:00
Paul Garlick da340369ac
gnu: python-vedo: Make pkg-config a native input. 
* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to...
[native-inputs]: ...here.
 2021-06-02 10:27:59 +01:00
Mark H Weaver 873c6b4f21
gnu: icecat: Update to 78.11.0-guix0-preview1 [fixes CVE-2021-29967]. 
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.
 2021-06-02 04:28:52 -04:00
Xinglu Chen 49e40006f6
gnu: python-hg-evolve: Update to 10.3.1. 
* gnu/packages/version-control.scm (python-hg-evolve): Update to 10.3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-06-02 10:36:12 +03:00
Vinicius Monego 51e8539566
gnu: python-sphinx-gallery: Update to 0.9.0. 
* gnu/packages/sphinx.scm (python-sphinx-gallery): Update to 0.9.0.
[source]: Build from PyPI.
[arguments]: Enable tests. Add custom 'check phase and phase to make
test files writable.
[native-inputs]: Add python-joblib, python-matplotlib, python-numpy,
python-pillow, python-pytest, python-pytest-cov, python-sphinx. Remove
python-pytest-runner.
[home-page]: Follow redirect.
(python2-sphinx-gallery): Remove package.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-06-02 10:22:01 +03:00
Simon Streit 841edfa491
gnu: redis: Update to 6.2.4 [security fixes]. 
Fixes CVE-2021-29477.

* gnu/packages/databases.scm (redis): Update to 6.2.4.
[arguments]: Disable the 'integration/failover' test.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-02 00:54:39 -04:00
Julien Lepiller b94bc3ea30
gnu: Add frama-c. 
* gnu/packages/maths.scm (frama-c): New variable.
 2021-06-02 03:10:12 +02:00
Julien Lepiller c9b3627d56
gnu: Add why3. 
* gnu/packages/maths.scm (why3): New variable.
 2021-06-02 03:10:04 +02:00
Zhu Zihao 2df1c4f134
gnu: rtl8821ce-linux-module: Update to 0.0.0-3.897e7c4. 
Fix the broken build with linux-libre 5.12.

* gnu/packages/linux.scm (rtl8821ce-linux-module): Update to 0.0.0-3.897e7c4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-06-01 23:26:08 +02:00
Ludovic Courtès 2885c3568e
machine: ssh: Gracefully handle failure of the effectful bits. 
Previously, '&inferior-exception' raised by 'upgrade-shepherd-services'
and co. would go through as-is, leaving users with an ugly backtrace.

* gnu/machine/ssh.scm (deploy-managed-host): Define
'eval/error-handling' and use it in lieu of EVAL as arguments to
'switch-to-system', 'upgrade-shepherd-services', and
'install-bootloader'.
 2021-06-01 23:26:07 +02:00
Ludovic Courtès 0db906c52c
services: cuirass: Do not export record type descriptors. 
* gnu/services/cuirass.scm (<cuirass-remote-server-configuration>)
(<cuirass-configuration>, <cuirass-remote-worker-configuration>): Do not
export.
 2021-06-01 23:26:07 +02:00
Ludovic Courtès ec9307ea07
services: cuirass: Create the profile and GC root directory. 
* gnu/services/cuirass.scm (cuirass-activation): Create
/var/guix/profiles/per-user/cuirass/cuirass or similar.
 2021-06-01 23:26:07 +02:00
Ludovic Courtès fed83e52fe
nls: Translate (guix diagnostics). 
* po/guix/POTFILES.in: Add guix/diagnostics.scm.
 2021-06-01 23:26:07 +02:00
Ludovic Courtès 5bcb4f8a58
ui, lint: Simplify exception handling in Guile 3 style. 
* guix/lint.scm (check-derivation)[try]: Remove "catch #t" wrapping.
* guix/ui.scm (call-with-error-handling): Remove "catch 'system-error"
and move 'system-error handling to the &exception-with-kind-and-args
clause.
 2021-06-01 23:26:07 +02:00
Ludovic Courtès 82d8ab01f5
maint: Require Guile 3.0. 
* configure.ac: Require Guile 3.0.
* doc/guix.texi (Requirements): Adjust accordingly.
* gnu/packages/package-management.scm (guile2.2-guix): Remove.
* guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'.
* guix/scripts/deploy.scm (deploy-machine*): Likewise.
* guix/store.scm (call-with-store): Likewise.
* guix/swh.scm (http-get*, http-post*): Likewise.
* guix/ui.scm (without-compiler-optimizations, guard*)
(call-with-error-handling): Likewise.
 2021-06-01 23:26:07 +02:00
Efraim Flashner 49b15701ad
gnu: llvm-7: Update to 7.1.0. 
* gnu/packages/llvm.scm (llvm-7): Update to 7.1.0.
 2021-06-01 22:50:47 +03:00
Marius Bakke 8d14d602ea
gnu: unbound: Enable DoH support. 
* gnu/packages/dns.scm (unbound)[inputs]: Add NGHTTP2:LIB.
[arguments]: Add "--with-libnghttp2" to #:configure-flags.
 2021-06-01 20:21:54 +02:00
Marius Bakke 304895d5e0
gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 91.
(%chromium-version): Set to 91.0.4472.77.
(%ungoogled-revision): Set to 91.0.4472.77-1-0-g6802c88.
(%debian-patches): Remove obsolete patch.
(%ungoogled-origin): Update hash.
(ungoogled-chromium-snippet): Add substitution for an unbundling file.
(ungoogled-chromium): Update hash.
[arguments]: Add a substitution previously provided by a Debian patch.
[inputs]: Change from ICU-68 to ICU-69.
 2021-06-01 20:21:54 +02:00
Marius Bakke e54c03c1f5
gnu: icu4c: Add 69.1. 
* gnu/packages/icu4c.scm (icu4c-69): New public variable.
 2021-06-01 20:21:54 +02:00
Efraim Flashner 9ea6e3f4d8
gnu: gcc-9: Update to 9.4.0. 
* gnu/packages/gcc.scm (gcc-9): Update to 9.4.0.
 2021-06-01 20:54:06 +03:00
Leo Prikler cb821238ed
gnu: musescore: Add missing QML imports. 
This fixes an issue wherein the palettes sidebar would turn up empty.

* gnu/packages/music.scm (musescore)[build-system]: Use qt-build-systems.
[inputs]: Add qtgraphicaleffects.
 2021-06-01 18:52:48 +02:00
Jonathan Brielmaier 776a21a096
gnu: rust-cbindgen@0.17: Update to 0.19.0. 
* gnu/packages/rust-apps.scm (rust-cbindgen-0.17): Update to 0.19.0 and
rename to rust-cbindgen-0.19.
 2021-06-01 17:59:34 +02:00
Mathieu Othacehe 0b76b25a0e
tests: hpcguix-web: Fix it. 
* gnu/tests/web.scm (run-hpcguix-web-server-test): Increase the VM memory size
and add retries for the http-get test.
 2021-06-01 14:33:27 +02:00
Roel Janssen 7ae2b1f2dc
gnu: Add bamutils. 
* gnu/packages/bioinformatics.scm (bamutils): New variable.
 2021-06-01 13:14:38 +02:00
Pierre Neidhardt b4e3b77270
gnu: sbcl: Update to 2.1.5. 
* gnu/packages/lisp.scm (sbcl): Update to 2.1.5.
 2021-06-01 12:01:24 +02:00
Paul Garlick 641a88e8c8
gnu: Add python-vedo. 
* gnu/packages/python-science.scm (python-vedo): New variable.
 2021-06-01 10:24:46 +01:00