gnu: Add libmaus2.

* gnu/packages/bioinformatics.scm (libmaus2): New variable.
This commit is contained in:
Ricardo Wurmus 2021-06-02 12:12:00 +02:00
parent f01215635a
commit 18e0081045
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -10969,6 +10969,46 @@ (define-public bandage
(license (list license:gpl2+ ; bundled ogdf
license:gpl3+))))
(define-public libmaus2
(package
(name "libmaus2")
(version "2.0.786")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/german.tischler/libmaus2")
(commit (string-append version "-release-20210531143054"))))
(file-name (git-file-name name version))
(sha256
(base32
"1rxakmwjcx2yq5sjh3v849f7dfw4xzc2fyzf6s28s3p95z84w564"))))
(build-system gnu-build-system)
;; The test suite attempts to execute ../test-driver, which does not exist.
(arguments '(#:tests? #false))
(propagated-inputs
`(("zlib" ,zlib)))
(native-inputs
`(("gcc" ,gcc-10) ;Code has C++17 requirements
("pkg-config" ,pkg-config)))
(home-page "https://gitlab.com/german.tischler/libmaus2")
(synopsis "Collection of data structures and algorithms useful for bioinformatics")
(description "libmaus2 is a collection of data structures and
algorithms. It contains:
@itemize
@item I/O classes (single byte and UTF-8);
@item @code{bitio} classes (input, output and various forms of bit level
manipulation);
@item text indexing classes (suffix and LCP array, fulltext and minute (FM),
etc.);
@item BAM sequence alignment files input/output (simple and collating);
and many lower level support classes.
@end itemize\n")
;; The code is explicitly available under the terms of either GPLv2 or
;; GPLv3 according to the AUTHORS file, though most files have a GPLv3+
;; license header.
(license (list license:gpl2+ license:gpl3+))))
(define-public r-circus
(package
(name "r-circus")