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116019 commits

Author SHA1 Message Date
Zhu Zihao 07ac0cb722
gnu: d-feet: Fix build errors when using Meson 1.1.0.
Fix the build error:

data/meson.build:15:0: ERROR: Function does not take positional arguments.
data/meson.build:27:0: ERROR: Function does not take positional arguments.

* gnu/packages/patches/d-feet-drop-unused-meson-argument.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/gnome.scm (d-feet)[source]: Use it here.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-06-04 08:20:13 +02:00
Arun Isaac b3492964c2
gnu: font-charter: Remove woff2 output.
The font-build-system now installs web fonts too. So, a separate woff2 output
is not necessary.

* gnu/packages/fonts.scm (font-charter)[outputs, arguments]: Delete.
2023-06-03 22:13:08 +01:00
Efraim Flashner bb3454a83f
gnu: notcurses: Enable building without pandoc.
* gnu/packages/notcurses.scm (notcurses)[arguments]: Adjust
configure-flags to not use pandoc on systems where pandoc isn't
supported.
[native-inputs]: Don't include pandoc on systems where it isn't
supported.
2023-06-03 22:10:51 +03:00
Hilton Chain 66c9b82fed
gnu: emacs-straight-el: Update to 0-2.039e5c9.
* gnu/packages/emacs-xyz.scm (emacs-straight-el): Update to 0-2.039e5c9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-03 12:35:05 +01:00
Artyom V. Poptsov e8eb389594
gnu: guile-png: Update to 0.5.0.
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.5.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-03 12:34:43 +01:00
gemmaro f30f8ecc69
gnu: python-zulip: Fix test failure.
* gnu/packages/messaging.scm (python-zulip): Fix test failure.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-03 12:33:52 +01:00
Christopher Baines c5aeb15267
gnu: guix-build-coordinator: Update to 0-85.c44d485.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-85.c44d485.
2023-06-03 12:21:31 +01:00
Andy Tai 9cf6833033
gnu: Remove obs-spectralizer.
As project no longer developed and not building with current obs.

* gnu/packages/video.scm (obs-spectralizer): Remove variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-06-03 12:16:17 +01:00
Antero Mejr 76b7c50645
gnu: Add s7.
* gnu/packages/lisp.scm (s7): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-06-03 16:35:52 +08:00
Antero Mejr 1569f7d77e
gnu: Add s7-bootstrap.
* gnu/packages/lisp.scm (s7-bootstrap): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-06-03 16:35:52 +08:00
Antero Mejr f2f8e2fa2f
gnu: notcurses: Update to 3.0.9.
* gnu/packages/notcurses.scm (notcurses): Update to 3.0.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-06-03 16:35:52 +08:00
Ricardo Wurmus da71721db1
gnu: r-biased-urn: Update to 2.0.10.
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.10.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus 79b52c60e9
gnu: r-matrixstats: Update to 1.0.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.0.0.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus 3f8a983cae
gnu: r-mvtnorm: Update to 1.2-0.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-0.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus fccc10b655
gnu: r-stringfish: Update to 0.15.8.
* gnu/packages/cran.scm (r-stringfish): Update to 0.15.8.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus 6c321bbded
gnu: r-scico: Update to 1.4.0.
* gnu/packages/cran.scm (r-scico): Update to 1.4.0.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus a066040856
gnu: r-shapforxgboost: Update to 0.1.3.
* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.3.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus e786bef048
gnu: r-projpred: Update to 2.6.0.
* gnu/packages/cran.scm (r-projpred): Update to 2.6.0.
[propagated-inputs]: Remove r-ucminf; add r-scales.
2023-06-03 08:32:03 +02:00
Ricardo Wurmus 944bcae0d4
gnu: r-stanheaders: Update to 2.26.26.
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.26.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 885811d599
gnu: r-regsem: Update to 1.9.5.
* gnu/packages/cran.scm (r-regsem): Update to 1.9.5.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus d3bf7c1852
gnu: r-adabag: Update to 5.0.
* gnu/packages/cran.scm (r-adabag): Update to 5.0.
[propagated-inputs]: Add r-consrank, r-dplyr, and r-tidyr.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 0ca364577a
gnu: r-assertive-code: Update to 0.0-4.
* gnu/packages/cran.scm (r-assertive-code): Update to 0.0-4.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 385b7f6ce6
gnu: r-ontologyindex: Update to 2.11.
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.11.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 399657122b
gnu: r-performance: Update to 0.10.4.
* gnu/packages/cran.scm (r-performance): Update to 0.10.4.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 1a9d42ad1e
gnu: r-biasedurn: Update to 2.0.10.
* gnu/packages/cran.scm (r-biasedurn): Update to 2.0.10.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus e0e8974176
gnu: r-maptools: Update to 1.1-7.
* gnu/packages/cran.scm (r-maptools): Update to 1.1-7.
2023-06-03 08:32:02 +02:00
Ricardo Wurmus 2ebd2d1050
gnu: r-catdap: Update to 1.3.7.
* gnu/packages/cran.scm (r-catdap): Update to 1.3.7.
[propagated-inputs]: Add r-rcolorbrewer.
2023-06-03 08:32:01 +02:00
Ricardo Wurmus c34e0df73e
gnu: r-ucminf: Update to 1.2.0.
* gnu/packages/cran.scm (r-ucminf): Update to 1.2.0.
2023-06-03 08:32:01 +02:00
Ricardo Wurmus 4c14c0a574
gnu: r-sp: Update to 1.6-1.
* gnu/packages/cran.scm (r-sp): Update to 1.6-1.
2023-06-03 08:32:01 +02:00
Ricardo Wurmus 6b07e52752
gnu: r-ggrastr: Update to 1.0.2.
* gnu/packages/cran.scm (r-ggrastr): Update to 1.0.2.
2023-06-03 08:32:01 +02:00
Ricardo Wurmus a8ac423090
gnu: r-ggpicrust2: Update to 1.7.0.
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.0.
[propagated-inputs]: Add r-circlize.
[native-inputs]: Add r-knitr.
2023-06-03 08:32:01 +02:00
Ricardo Wurmus 01d9a691be
gnu: r-rmarkdown: Update to 2.22.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.22.
[properties]: Add hints to the updater.
2023-06-03 08:31:20 +02:00
Ricardo Wurmus f69e0f7927
gnu: r-rgdal: Update to 1.6-7.
* gnu/packages/cran.scm (r-rgdal): Update to 1.6-7.
[properties]: Add hints to the updater.
2023-06-03 08:30:37 +02:00
Ricardo Wurmus 51f2fe6542
gnu: Add r-consrank.
* gnu/packages/cran.scm (r-consrank): New variable.
2023-06-03 08:27:39 +02:00
Ricardo Wurmus c11b92a8aa
gnu: Add r-singlet.
* gnu/packages/bioinformatics.scm (r-singlet): New variable.
2023-06-02 21:18:26 +02:00
Ricardo Wurmus 76eda50717
gnu: Add r-rcppml/devel.
* gnu/packages/machine-learning.scm (r-rcppml/devel): New variable.
2023-06-02 19:54:27 +02:00
Navid Afkhami f09944461f
gnu: Add python-cell2cell.
* gnu/packages/bioinformatics.scm (python-cell2cell): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-06-02 19:54:27 +02:00
Ludovic Courtès 69dfdb7bd1
environment: Fix unbound-variable bug with '--symlink'.
Fixes <https://issues.guix.gnu.org/63845>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

* guix/scripts/environment.scm (launch-environment/container): Reference
'evaluate-populate-directive' before calling 'call-with-container'.
2023-06-02 16:57:17 +02:00
Jean-Pierre De Jesus DIAZ 7469d9c106
gnu: Add coccinelle.
* gnu/packages/patchutils.scm (coccinelle): New variable.

Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:27:41 +02:00
Jean-Pierre De Jesus DIAZ 5461ff1e54
gnu: Add ocaml-pyml.
* gnu/packages/ocaml.ml (ocaml-pyml): New variable.

Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:27:39 +02:00
Jean-Pierre De Jesus DIAZ 4017fae4e0
gnu: Add ocaml-stdcompat.
* gnu/packages/ocaml.scm (ocaml-stdcompat): New variable.

Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:27:34 +02:00
Jean-Pierre De Jesus DIAZ bb7f978e60
gnu: Add ocaml-parmap.
* gnu/packages/ocaml.scm (ocaml-parmap): New variable.

Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:27:29 +02:00
Greg Hogan d756564db5
gnu: Add tmux-plugin-mem-cpu-load.
* gnu/packages/tmux.scm (tmux-plugin-mem-cpu-load): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:25:44 +02:00
Brian Cully dbbc7e9461
services: Error in MODIFY-SERVICES when services don't exist
This patch causes MODIFY-SERVICES to raise an error if a reference is made to
a service which isn't in its service list. This it to help users notice if
they have an invalid rule, which is currently silently ignored.

* gnu/services.scm (%delete-service):  new procedure
(%apply-clauses): new syntax rule
(%modify-service): remove syntax rule

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:23:03 +02:00
Brian Cully ae707b62e7
tests: Check for service existence in MODIFY-SERVICES
* tests/services.scm ("modify-services: delete non-existing service")
("modify-services: change value for non-existing service"): New tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:16:12 +02:00
Brian Cully 09fcf261c1
tests: Add tests for MODIFY-SERVICES procedure
* tests/services.scm ("modify-services: do nothing")
("modify-services: delete service")
("modify-services: change value"): New tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:16:07 +02:00
Ludovic Courtès decf5fed65
gnu: cuirass: Update to b825967.
Fixes a regression introduced with the guile-squee update in
63e5975cac (which brings
non-blocking/asynchronous 'exec-query') whereby Cuirass would call
'exec-query' whereby another command was being processed.

* gnu/packages/ci.scm (cuirass): Update to b825967.
2023-06-02 16:13:35 +02:00
Greg Hogan 7d7dcc3600
gnu: python-ipython-documentation: Update dependencies.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
[native-inputs]: Add python-ipykernel.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:08:43 +02:00
Greg Hogan f1af4fbeec
gnu: python-ipython-documentation: Remove patches.
* gnu/packages/python-xyz.scm (python-ipython-documentation)[source]:
Remove upstreamed patches.
* gnu/packages/patches/python-ipython-documentation-chars.patch,
gnu/packages/patches/python-ipython-documentation-repro.patch:
Delete files.
* gnu/local.mk: Remove files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:08:39 +02:00
Greg Hogan 53c47c4f28
gnu: python-docrepr: Fix tests.
* gnu/packages/patches/python-docrepr-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/documentation.scm (python-docrepr)[source]<patches>: Use
  it here.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-02 16:08:28 +02:00