guix/gnu/packages
Ricardo Wurmus 3a0babacdc
gnu: Add r-htscluster.
* gnu/packages/bioconductor.scm (r-htscluster): New variable.
2019-03-04 15:00:18 +01:00
..
aux-files gnu: Add ungoogled-chromium. 2019-02-18 23:41:56 +01:00
bootstrap
patches gnu: libopenshot: Fix tests on other architectures. 2019-03-03 17:35:49 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: audit: Update to 2.8.5. 2019-03-02 22:21:16 +01:00
adns.scm
agda.scm gnu: agda: Update to 2.5.4.2. 2019-02-24 17:51:28 +01:00
aidc.scm
algebra.scm gnu: giac-xcas: Update to 1.5.0-43. 2019-02-28 00:39:53 +01:00
android.scm
animation.scm
anthy.scm
antivirus.scm gnu: clamav: Update to 0.101.1. 2019-02-24 17:51:29 +01:00
apl.scm
apr.scm
aspell.scm
assembly.scm gnu: fasm: Update to 1.73.09. 2019-02-21 17:26:45 +01:00
astronomy.scm
attr.scm
audio.scm gnu: Add faudio. 2019-03-03 11:01:51 +01:00
augeas.scm
authentication.scm
autogen.scm gnu: autogen: Update to 5.18.16. 2019-02-24 17:51:29 +01:00
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: librsync: Update to 2.0.2. 2019-02-25 18:23:06 -05:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: Add r-htscluster. 2019-03-04 15:00:18 +01:00
bioinformatics.scm gnu: pigx-chipseq: Update to 0.0.31. 2019-03-02 22:05:30 +01:00
bison.scm
bittorrent.scm gnu: qbittorrent: Don't use unstable tarball. 2019-02-17 18:43:21 +01:00
boost.scm gnu: Add boost-signals2. 2019-02-23 13:40:19 +01:00
bootloaders.scm
bootstrap.scm
build-tools.scm gnu: gn: Update to commit 1ab6fa2cab7ec64840db720a56018ca8939329f9. 2019-02-22 17:10:24 +01:00
busybox.scm gnu: toybox: Update to 0.8.0. 2019-02-17 03:37:50 +01:00
c.scm
calcurse.scm
calendar.scm gnu: remind: Update to 3.1.16. 2019-02-21 17:26:46 +01:00
ccache.scm
cdrom.scm gnu: cdrtools: Disable build parallelism. 2019-02-21 22:17:05 -06:00
certs.scm
check.scm gnu: python2-coverage-test-runner: Update to 1.15. 2019-02-23 18:31:18 +01:00
chemistry.scm
chez.scm gnu: chez-sockets: Use GIT- helpers. 2019-02-16 19:02:07 +01:00
chromium.scm gnu: ungoogled-chromium: Update to 72.0.3626.121-0.a80839c [fixes CVE-2019-5786]. 2019-03-02 22:21:16 +01:00
ci.scm
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: cflow: Update to 1.6. 2019-02-27 09:50:30 +02:00
commencement.scm
compression.scm gnu: unshield: Update to 1.4.3. 2019-02-16 19:02:03 +01:00
compton.scm
conky.scm
connman.scm
cook.scm
coq.scm gnu: coq-flocq: Update to 3.1.0. 2019-03-01 21:52:59 +01:00
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-capushe. 2019-03-04 15:00:05 +01:00
cross-base.scm
crypto.scm gnu: Add hpenc. 2019-02-26 00:02:00 -05:00
cryptsetup.scm
cups.scm
curl.scm gnu: guile-curl: Update to 0.6. 2019-02-17 09:59:46 +01:00
cyrus-sasl.scm
databases.scm gnu: tdb: Update to 1.3.18. 2019-03-02 22:21:15 +01:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm gnu: Add scanmem. 2019-02-17 12:23:53 +01:00
dejagnu.scm
dico.scm
dictionaries.scm gnu: Remove unneeded uses of python{,2}-minimal. 2019-02-17 18:44:18 +01:00
digest.scm
direct-connect.scm
disk.scm gnu: libblockdev: Update to 2.21. 2019-02-27 15:48:52 +01:00
display-managers.scm
django.scm
djvu.scm
dlang.scm gnu: LLVM, Clang: Update to 7.0.1. 2019-02-15 12:12:09 +01:00
dns.scm gnu: bind: Update to 9.12.3-P4. 2019-02-24 17:51:30 +01:00
docbook.scm
docker.scm gnu: containerd: Update to 1.2.4. 2019-02-19 09:54:34 +01:00
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir.scm
emacs-xyz.scm gnu: emacs-helm-emms: Update to 20190304. 2019-03-04 12:17:13 +01:00
emacs.scm gnu: guile-emacs: Fetch source over HTTPS and be more idiomatic. 2019-02-25 18:23:14 -05:00
embedded.scm
emulators.scm gnu: mgba: Add libelf input. 2019-02-26 16:19:26 +01:00
enchant.scm
engineering.scm gnu: gerbv: Update to 2.7.0. 2019-02-19 09:54:34 +01:00
enlightenment.scm
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm
firmware.scm
flashing-tools.scm gnu: 0xffff: Don't use unstable tarball. 2019-02-24 13:37:04 +01:00
flex.scm
fltk.scm
fonts.scm Revert "gnu: font-awesome: Update to 5.7.2." 2019-02-25 19:29:25 -05:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: libqmi: Update to 1.22.2. 2019-03-01 17:31:19 +01:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: filezilla: Update to 3.40.0. 2019-02-15 05:41:18 +01:00
fvwm.scm
game-development.scm gnu: ois: Update to 1.5. 2019-02-22 02:49:10 +01:00
games.scm gnu: wesnoth: Update to 1.14.6. 2019-02-27 15:48:52 +01:00
gawk.scm
gcal.scm
gcc.scm gnu: GCC: Update to 8.3.0. 2019-02-28 19:08:48 +01:00
gd.scm gnu: libgd: Fix CVE-2019-{6977,6978}. 2019-02-19 15:47:35 -05:00
gdb.scm
genimage.scm gnu: Add genimage. 2019-02-15 17:49:08 +01:00
geo.scm gnu: protozero: Fix typo in description. 2019-02-19 09:54:35 +01:00
gettext.scm
ghostscript.scm
gimp.scm gnu: gimp: Update to 2.10.8. 2019-02-19 09:54:36 +01:00
gkrellm.scm
gl.scm gnu: LLVM, Clang: Update to 7.0.1. 2019-02-15 12:12:09 +01:00
glib.scm gnu: appstream-glib: Update to 0.7.15. 2019-03-02 22:21:16 +01:00
gnome.scm gnu: eolie: Update to 0.9.52. 2019-03-03 09:24:02 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gwenhywfar, aqbanking: Use HTTPS home page. 2019-02-24 21:29:21 +01:00
gnunet.scm
gnupg.scm gnu: pius: Update to 2.2.7. 2019-02-17 03:37:48 +01:00
gnustep.scm
gnuzilla.scm gnu: rust: Factor out "cargo-utils" from "cargo-build-system". 2019-03-01 08:20:50 +01:00
gobby.scm
golang.scm
gperf.scm
gprolog.scm
gps.scm
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: clipit: Update to 1.4.4. 2019-02-17 03:37:48 +01:00
guile-wm.scm
guile-xyz.scm gnu: guile-hall: Clean up. 2019-02-15 17:43:49 +01:00
guile.scm
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm gnu: wavemon: Update to 0.9.0. 2019-02-17 03:37:48 +01:00
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell.scm gnu: ghc-tree-diff: Fix typo in description. 2019-02-21 19:55:04 +01:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm gnu: ibus-rime: Update to 1.4.0. 2019-02-16 01:00:09 +01:00
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: nip2: Update to 8.7.1. 2019-02-19 15:34:09 +01:00
image-viewers.scm gnu: feh: Update to 3.1.3. 2019-02-17 18:44:19 +01:00
image.scm gnu: grim: Don't use unstable tarball. 2019-02-19 15:34:09 +01:00
imagemagick.scm
inklingreader.scm
inkscape.scm
ipfs.scm
irc.scm gnu: quassel: Update to 0.13.1. 2019-02-17 08:29:18 +02:00
iso-codes.scm
java-compression.scm
java.scm gnu: java-eclipse-sisu-inject: Don't use unstable tarball. 2019-03-01 22:58:55 +01:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: ktexteditor: Don't use NAME in source URI. 2019-02-24 21:29:20 +01:00
kde-plasma.scm gnu: libksysguard: Update to 5.15.1. 2019-02-24 19:44:07 +01:00
kde.scm
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Update to 18.1. 2019-02-19 23:45:57 +01:00
language.scm
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm gnu: libedit: Update to 20181209-3.1. 2019-02-26 18:58:03 +01:00
libevent.scm
libffcall.scm
libffi.scm gnu: ruby-ffi: Update to 1.10.0. 2019-02-18 23:17:27 +01:00
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: LibreOffice: Update to 6.1.5.2. 2019-02-19 09:47:02 -05:00
libsigsegv.scm
libunistring.scm
libunwind.scm gnu: libunwind: Update to 1.3.1. 2019-02-28 22:35:41 +01:00
libusb.scm
license.scm
lighting.scm
linux.scm gnu: efibootmgr: Remove obsolete configure flag. 2019-03-01 17:31:19 +01:00
lirc.scm
lisp.scm gnu: sbcl: Update to 1.4.16. 2019-02-27 15:48:52 +01:00
llvm.scm gnu: Add libcxx. 2019-02-17 10:02:06 +01:00
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm gnu: libqtxdg: Don't use NAME in source URI. 2019-02-25 02:10:55 +01:00
m4.scm
machine-learning.scm gnu: ocaml@4.01: Remove the package, affected by a CVE, and its dependent 2019-02-19 22:59:06 +01:00
magic-wormhole.scm gnu: Add Magic-Wormhole. 2019-02-19 14:34:31 -05:00
mail.scm gnu: opensmtpd: Remove unused arguments. 2019-03-01 23:41:42 +01:00
make-bootstrap.scm
man.scm gnu: libpipeline: Update to 1.5.1. 2019-02-27 15:48:50 +01:00
markup.scm gnu: discount: Don't use NAME in source URI. 2019-02-25 02:10:54 +01:00
marst.scm
mastodon.scm gnu: Add toot. 2019-02-28 08:56:59 +02:00
mate.scm
maths.scm gnu: hypre: Remove indirect TexLive dependencies. 2019-03-01 12:55:34 +01:00
maven.scm
mc.scm gnu: mc: Update to 4.8.22. 2019-02-27 15:48:50 +01:00
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: gajim-omemo: Update to 2.6.27. 2019-02-25 13:33:07 +01:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm gnu: openmpi: Let configure enable PSM based on inputs. 2019-02-20 22:18:45 -06:00
mtools.scm
multiprecision.scm gnu: qd: Update to 2.3.22. 2019-02-24 13:37:05 +01:00
music.scm gnu: musescore: Update to 3.0.4. 2019-03-03 00:17:30 +01:00
musl.scm gnu: musl: Download sources over HTTPS. 2019-02-18 18:07:04 +01:00
nano.scm
ncdu.scm gnu: ncdu: Update to 1.14. 2019-02-18 18:07:05 +01:00
ncurses.scm gnu: dialog: Download sources over HTTPS. 2019-02-18 18:07:04 +01:00
netpbm.scm gnu: netpbm: Fix CVE-2017-258[67]. 2019-02-28 22:35:41 +01:00
nettle.scm
networking.scm gnu: perl-net-dns: Update to 1.19. 2019-03-01 23:41:41 +01:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: ocaml@4.01: Remove the package, affected by a CVE, and its dependent 2019-02-19 22:59:06 +01:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm gnu: beignet: Limit supported architectures. 2019-02-26 22:26:35 +02:00
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: diffoscope: Update to 112. 2019-02-25 21:33:45 -05:00
parallel.scm gnu: parallel: Update to 20190222. 2019-02-24 17:51:29 +01:00
password-utils.scm
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: fbida: Update to 2.14. 2019-02-17 19:37:44 +01:00
pem.scm
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: perl-net-idn-encode: Update to 2.500. 2019-02-24 13:37:05 +01:00
phabricator.scm
photo.scm
php.scm
pkg-config.scm
plotutils.scm gnu: asymptote: Remove indirect TexLive dependency. 2019-03-01 12:55:35 +01:00
polkit.scm
popt.scm gnu: gflags: Don't use NAME in source URI. 2019-02-23 03:30:10 +01:00
pretty-print.scm
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
pv.scm
python-check.scm gnu: python-coveralls: Update to 1.6.0. 2019-02-21 17:26:48 +01:00
python-compression.scm
python-crypto.scm gnu: python-cryptography: Update to 2.6.1. 2019-03-01 17:31:19 +01:00
python-web.scm gnu: Add python-autobahn. 2019-02-19 14:34:31 -05:00
python-xyz.scm gnu: python-matplotlib-documentation: Fix build. 2019-03-04 13:57:58 +01:00
python.scm gnu: Add micropython. 2019-02-20 09:09:47 +02:00
qt.scm gnu: Add qtcolorwidgets. 2019-02-17 12:14:57 +01:00
ragel.scm gnu: ragel: Update to 6.10. 2019-02-24 17:51:30 +01:00
rails.scm gnu: Add ruby-rails. 2019-02-14 21:38:03 +00:00
ratpoison.scm
rdesktop.scm gnu: rdesktop: Update to 1.8.4 [security fixes]. 2019-02-19 00:19:33 -05:00
rdf.scm
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2019-03-01. 2019-03-01 17:31:19 +01:00
robotics.scm
rrdtool.scm
rsync.scm gnu: librsync: Update to 2.0.2. 2019-02-25 18:23:06 -05:00
ruby.scm gnu: bundler: Update to 1.17.3. 2019-03-01 23:52:30 +01:00
rush.scm
rust.scm gnu: rust: Factor out "cargo-utils" from "cargo-build-system". 2019-03-01 08:20:50 +01:00
sagemath.scm gnu: python-cypari2: Adjust indentation. 2019-02-17 22:15:51 +01:00
samba.scm gnu: ldb: Update to 1.6.2. 2019-03-02 22:21:16 +01:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: sdl2: Add KMSDRM video backend. 2019-03-01 20:08:38 +01:00
search.scm
security-token.scm gnu: eid-mw: Update to 4.4.13. 2019-02-18 00:47:03 +01:00
selinux.scm
serialization.scm
serveez.scm
shells.scm
shellutils.scm
simh.scm gnu: simh: Don't use unstable tarball. 2019-02-17 20:26:53 +01:00
simulation.scm gnu: fenics-dolfin: Fix build. 2019-02-26 17:12:30 -05:00
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm gnu: speech-dispatcher: Build against eSpeak NG. 2019-02-28 19:08:49 +01:00
spice.scm gnu: Remove spice-protocol@0.12.14. 2019-02-25 16:00:20 +01:00
sqlite.scm
ssh.scm gnu: libssh: Update to 0.8.7. 2019-03-01 17:31:20 +01:00
sssd.scm
stalonetray.scm
statistics.scm gnu: libxls: Move to (gnu packages statistics). 2019-02-15 05:41:16 +01:00
stb.scm
storage.scm
suckless.scm
swig.scm
sync.scm gnu: owncloud-client: Update to 2.5.3.11470. 2019-02-20 09:06:43 +02:00
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm gnu: tcllib: Update to 1.19. 2019-02-25 02:10:55 +01:00
telephony.scm
terminals.scm gnu: libtermkey: Update to 0.21.1. 2019-02-21 17:26:47 +01:00
terraform.scm
tex.scm gnu: lyx: Parameterize more version variables. 2019-03-02 22:15:37 +02:00
texinfo.scm
text-editors.scm
textutils.scm gnu: Add nkf. 2019-02-25 23:16:48 -05:00
time.scm
tls.scm gnu: OpenSSL: Update to 1.1.1b. 2019-03-01 17:31:19 +01:00
tmux.scm
tor.scm gnu: tor: Update to 0.3.4.11 [fixes TROVE-2019-001]. 2019-02-21 19:55:05 +01:00
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: fossil: Remove bundled libraries. 2019-02-27 10:38:12 +02:00
video.scm gnu: avidemux: Build with modular qt. 2019-03-03 22:09:51 +02:00
vim.scm gnu: neovim: Update to 0.3.4. 2019-02-17 10:28:13 +01:00
virtualization.scm gnu: lookingglass: Update to commit 41f4166. 2019-02-25 16:00:20 +01:00
vpn.scm gnu: Add WireGuard. 2019-03-01 19:31:01 -05:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: luakit: Update to 2.1. 2019-02-16 01:00:09 +01:00
web.scm gnu: java-eclipse-jetty-http-test-classes: Return #t from all phases. 2019-03-01 22:58:55 +01:00
webkit.scm gnu: WebKitGTK: Update to 2.22.7. 2019-03-02 22:21:16 +01:00
wget.scm
wicd.scm
wine.scm gnu: wine-staging: Add faudio support. 2019-03-03 11:01:51 +01:00
wm.scm gnu: i3-wm: Epand description. 2019-02-18 00:47:02 +01:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: libwacom: Update to 0.32. 2019-02-27 15:48:51 +01:00
xfce.scm
xfig.scm
xiph.scm
xml.scm gnu: libxls: Move to (gnu packages statistics). 2019-02-15 05:41:16 +01:00
xnee.scm
xorg.scm gnu: xclock: Update to 1.0.8. 2019-02-20 16:40:33 +01:00
zile.scm