gnu: Add r-htscluster.
* gnu/packages/bioconductor.scm (r-htscluster): New variable.
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@ -1199,3 +1199,32 @@ (define-public r-dnacopy
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algorithm to segment DNA copy number data and identify genomic regions with
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abnormal copy number.")
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(license license:gpl2+)))
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;; This is a CRAN package, but it uncharacteristically depends on a
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;; Bioconductor package.
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(define-public r-htscluster
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(package
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(name "r-htscluster")
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(version "2.0.8")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "HTSCluster" version))
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(sha256
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(base32
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"0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"))))
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(properties `((upstream-name . "HTSCluster")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-capushe" ,r-capushe)
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("r-edger" ,r-edger)
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("r-plotrix" ,r-plotrix)))
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(home-page "https://cran.r-project.org/web/packages/HTSCluster")
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(synopsis "Clustering high-throughput transcriptome sequencing (HTS) data")
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(description
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"This package provides a Poisson mixture model is implemented to cluster
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genes from high-throughput transcriptome sequencing (RNA-seq) data. Parameter
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estimation is performed using either the EM or CEM algorithm, and the slope
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heuristics are used for model selection (i.e., to choose the number of
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clusters).")
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(license license:gpl3+)))
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