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Author SHA1 Message Date
Maxim Cournoyer fa3f7073a9
gnu: python-cmarkgfm: Update to 0.8.0. 
* gnu/packages/markup.scm (python-cmarkgfm): Update to 0.8.0.
 2022-05-12 12:45:57 -04:00
Maxim Cournoyer f2dfeef931
gnu: python-types-dataclasses: Fix typo. 
* gnu/packages/python-xyz.scm (python-types-dataclasses): Fix typo in description.
 2022-05-12 12:45:57 -04:00
Maxim Cournoyer d9bb301460
gnu: xeus: Update to 2.4.1. 
* gnu/packages/jupyter.scm (xeus): Update to 2.4.1.
[source]: Update Git URI.
 2022-05-12 12:45:57 -04:00
Maxim Cournoyer bf17d08256
gnu: python-jupyter-kernel-mgmt: Update to 0.5.1 and disable tests. 
* gnu/packages/jupyter.scm (python-jupyter-kernel-mgmt): Update to 0.5.1.
[arguments]: New field.
[propagated-inputs]: Add python-tornado.
[native-inputs]: Remove python-mock.  Add python-async-generator and
python-pytest-asyncio.
 2022-05-12 12:45:57 -04:00
Maxim Cournoyer 1178fdee3b
gnu: python-jupyter-protocol: Update to 0.2.0. 
* gnu/packages/jupyter.scm (python-jupyter-protocol): Update to 0.2.0.
[propagated-inputs]: Add python-ipython-genutils.
 2022-05-12 12:45:56 -04:00
Maxim Cournoyer 7fc8e9ea90
gnu: python-sparqlkernel: Use gexps and fix inputs. 
[arguments]: Use gexps.
[tests?]: Add comment.
[phases]: Delete trailing #t.
{no-custom-css}: Use a regular lambda.
{install-kernelspec}: Move after the add-installed-pythonpath phase.  Remove
now extraneous add-installed-pythonpath call.  Adjust for gexps.
[native-inputs]: Delete field.
[propagated-inputs]: Add python-ipykernel, python-notebook, python-rdflib and
pythopython-traitlets.
[description]: Avoid '&' in description.
 2022-05-12 12:45:56 -04:00
Maxim Cournoyer 2c30237809
gnu: python-sparqlwrapper: Update to 2.0.0. 
* gnu/packages/rdf.scm (python-sparqlwrapper): Update to 2.0.0.
[source]: Adjust Git URI.
 2022-05-12 12:45:56 -04:00
Maxim Cournoyer 5fcd6aefe9
gnu: python-voila: Update to 0.3.5. 
* gnu/packages/jupyter.scm (python-voila): Update to 0.3.5.
[source]: Use git.
[arguments]: New field.
[propagated-inputs]: Add python-jupyterlab-server, python-traitlets and
python-websockets.
[native-inputs]: Remove python-jupyter-packaging and python-setuptools.  Add
python-numpy and python-pandas.
 2022-05-12 12:45:56 -04:00
Maxim Cournoyer 5f3457ccbb
gnu: python-jupyter-server: Update to 1.16.0. 
* gnu/packages/jupyter.scm (python-jupyter-server): Update to 1.16.0.
[propagated-inputs]: Remove python-ipython-genutils and
python-requests-unixsocket.
 2022-05-12 12:45:56 -04:00
Maxim Cournoyer 34106c85d8
gnu: python-umap-learn: Update to 0.5.3. 
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3.
[source]: Use git.
[arguments]: New field.
[native-inputs]: Delete python-joblib and python-nose.  Add python-pytest.
[propagated-inputs]: Add python-pynndescent and python-tqdm.
[synopsis]: Fix indentation.
[description]: Fix typo and re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer 06b0512260
gnu: python-pynndescent: Update to 0.5.6. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6.
[phases]{check}: Skip the test_weighted_minkowski test.
[native-inputs, propagated-inputs]: Re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer 1d1f44b709
gnu: python-scikit-learn: Parallelize build and test suite. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[phases]{configure}: New phase.
{build-ext}: Add '-j' option.
{check}: Add '-n' option.
[native-inputs]: Add python-pytest-xdist.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer c359a4fabb
gnu: python-pandas: Update to 1.4.2. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer 8b390a8750
gnu: python-pandas: Build and run tests in parallel. 
* gnu/packages/python-science.scm (python-pandas)
[phases]{enable-parallel-build}: New phase.
{check}: Add xdist -n option.  Skip test_memory_usage test.
[native-inputs]: Add python-pytest-xdist.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer feee911366
gnu: python-numba: Update to 0.55.1. 
* gnu/packages/python-xyz.scm (python-numba): Update to 0.55.1.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer 152e45ef4d
gnu: python-llvmlite: Update to 0.38.0. 
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.38.0.
 2022-05-12 12:45:54 -04:00
Maxim Cournoyer 411cd4345f
gnu: python-numpy: Update to 1.21.6 and parallelize build/tests. 
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.6.  Move inputs
and native-inputs fields after arguments.  Use gexps.
[modules]: New argument.
[phases]{parallelize-build}: New phase.
{configure-blas}: Format via (ice-9 format).
{fix-executable-paths}: Use search-file-input.  Remove obsolete system_info.py
substitution.
{check}: Remove extraneous add-installed-pythonpath and setenv calls.  Provide
the '-n' pytest-xdist option.
[native-inputs]: Use python-hypothesis-next.
(python-numpy-next): Inherit from python-numpy.
(python2-numpy): Adjust for gexps.
[phases]{delete-failing-test}: Rename to...
{delete-failing-tests}: ... this.
(python2-numpy-1.8): Likewise, and delete 'delete-failing-tests' phase.
Disable tests.
[native-inputs]: Define as the empty list.
 2022-05-12 12:45:54 -04:00
Maxim Cournoyer bfe7f40650
gnu: python-hypothesis-6.23: Update to 6.43.3. 
* gnu/packages/check.scm (python-hypothesis-6.23): Update to 6.43.3 and rename
to...
(python-hypothesis-next): ... this.
[propagated-inputs]: Add python-pytest.
* gnu/packages/matrix.scm (python-matrix-nio): Adjust accordingly.
* gnu/packages/python-web.scm (python-h2): Likewise.
* gnu/packages/check.scm (python-hypothesis)[home-page]: Update URL.
 2022-05-12 12:45:54 -04:00
Maxim Cournoyer 1a564cf147
gnu: Add python-jupyterlab-server. 
* gnu/packages/jupyter.scm (python-jupyterlab-server): New variable.
 2022-05-12 12:45:54 -04:00
Maxim Cournoyer 3f9eafbedd
gnu: Add python-openapi-core. 
* gnu/packages/python-web.scm (python-openapi-core): New variable.
 2022-05-12 12:45:53 -04:00
Maxim Cournoyer ea754c74d3
gnu: Add python-dictpath. 
* gnu/packages/python-xyz.scm (python-dictpath): New variable.
 2022-05-12 12:45:53 -04:00
Maxim Cournoyer e5d3408022
gnu: python-falcon: Update to 3.1.0. 
* gnu/packages/python-web.scm (python-falcon): Update to 3.1.0.
[source]: Use git.  Adjust snippet.
[phases]{check}: Set HOME and invoke pytests with "-vv".
[native-inputs]: Add python-aiofiles, python-cbor2, python-fakeredis,
python-httpx, python-pecan, python-pillow, python-pytest-asyncio and
python-websockets.
[synopsis, description]: Fix indentation.
 2022-05-12 12:45:53 -04:00
Maxim Cournoyer a64ea1f2d3
gnu: python-fakeredis: Update to 1.7.1. 
* gnu/packages/databases.scm (python-fakeredis): Update to 1.7.1.
[propagated-inputs]: Add python-aioredis.
 2022-05-12 12:45:53 -04:00
Maxim Cournoyer eba0784937
gnu: Add python-aioredis. 
* gnu/packages/databases.scm (python-aioredis): New variable.
 2022-05-12 12:45:53 -04:00
Maxim Cournoyer 0d58503970
gnu: Add python-pecan. 
* gnu/packages/python-web.scm (python-pecan): New variable.
 2022-05-12 12:45:52 -04:00
Maxim Cournoyer df95872d10
gnu: python-sqlalchemy: Update to 1.4.35. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.35.
 2022-05-12 12:45:52 -04:00
Maxim Cournoyer 72d292eac0
gnu: python-sqlalchemy: Run tests in parallel via xdist. 
* gnu/packages/databases.scm (python-sqlalchemy)[phases]: Use gexps.
{check}: Run tests in parallel; skip slow test_memusage.
* gnu/packages/databases.scm (python2-sqlalchemy): Adjust to avoid xdist.
 2022-05-12 12:45:52 -04:00
Maxim Cournoyer 1f5f4cc1a2
gnu: Add python-socksio. 
* gnu/packages/python-web.scm (python-socksio): New variable.
 2022-05-12 12:45:52 -04:00
Maxim Cournoyer 634a798f51
gnu: python-uvicorn: Update to 0.17.6. 
* gnu/packages/python-web.scm (python-uvicorn): Update to 0.17.6.
[phases]{check}: Delete extraneous add-installed-pythonpath and inputs/outputs
arguments.  Add the '-o' 'asyncio_mode=auto' option to pytest invocation, and
skip two tests.
[native-inputs]: Add python-httpx-bootstrap and python-pytest-asyncio.
[propagated-inputs]: Add python-asgiref and python-dotenv.
 2022-05-12 12:45:52 -04:00
Maxim Cournoyer b4c4c2f82e
gnu: python-httpx: Update to 0.22.0. 
* gnu/packages/python-web.scm (python-httpx): Update to 0.22.0.
[phases]{check}: Add 'asyncio_mode=auto' pytest-asyncio option.  Skip the
'test_main' test.
[native-inputs]: Delete python-autoflake, python-black, python-cryptography,
python-flake8, python-flake8-bugbear, python-flake8-pie, python-isort,
python-mypy and python-pytest-cov.
[propagated-inputs]: Add python-charset-normalizer.
 2022-05-12 12:45:51 -04:00
Maxim Cournoyer ef370c8501
gnu: Add python-httpx-bootstrap. 
* gnu/packages/python-web.scm (python-httpx-bootstrap): New variable.
 2022-05-12 12:45:51 -04:00
Maxim Cournoyer b9fc478192
gnu: Add python-httpcore-bootstrap. 
* gnu/packages/python-web.scm (python-httpcore-bootstrap): New variable.
 2022-05-12 12:45:51 -04:00
Maxim Cournoyer f17611f3be
gnu: python-httpcore: Update to 0.14.7 and enable tests. 
* gnu/packages/python-web.scm (python-httpcore): Update to 0.14.7.
[tests?]: Delete argument.
[phases]{check}: Streamline and delete coverage related pytest options.
Strip trailing #t.
[native-inputs]: Delete python-autoflake, python-flake8,
python-flake8-bugbear, python-flake8-pie and python-mypy.  Add
python-pytest-httpbin.
[propagated-inputs]: Add python-anyio, python-certifi and python-socksio.
 2022-05-12 12:45:51 -04:00
Maxim Cournoyer c5d5c14101
gnu: Add python-cbor2. 
* gnu/packages/python-web.scm (python-cbor2): New variable.
 2022-05-12 12:45:51 -04:00
Maxim Cournoyer a81161c1a4
gnu: Add python-openapi-spec-validator. 
* gnu/packages/python-web.scm (python-openapi-spec-validator): New variable.
 2022-05-12 12:45:50 -04:00
Maxim Cournoyer 27c49acf06
gnu: Add python-openapi-schema-validator. 
* gnu/packages/python-web.scm (python-openapi-schema-validator): New variable.
 2022-05-12 12:45:50 -04:00
Maxim Cournoyer ac4a73a1af
gnu: Add python-rfc3339-validator. 
* gnu/packages/python-xyz.scm (python-rfc3339-validator): New variable.
 2022-05-12 12:45:50 -04:00
Maxim Cournoyer 34c98f2cd3
gnu: Add python-strict-rfc3339. 
* gnu/packages/python-xyz.scm (python-strict-rfc3339): New variable.
 2022-05-12 12:45:50 -04:00
Maxim Cournoyer 37caa64189
gnu: python-websockets: Update to 10.3 and enable tests. 
* gnu/packages/python-web.scm (python-websockets): Fetch from git.
Update to 10.3.
[arguments]: Delete field, enabling tests.
 2022-05-12 12:45:50 -04:00
Maxim Cournoyer 2576d9ffc4
gnu: python-ipython-documentation: Also build info and pdf targets. 
* gnu/packages/patches/python-ipython-documentation-chars.patch: New file.
* gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise.
* gnu/local.mk: Register them.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
[source]: Apply patches.
[arguments]: Use gexps.
[phases]{sanitize-sources}: New phase.
{configure-sphinx-for-xelatex}: Likewise.
{install}: Streamline.  Also build and install the PDF and info manual.
Enable parallel processing.
[inputs]: Delete field.
[propagated-inputs]: Remove texlive-updmap.cfg input.  Add fontconfig,
font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia,
texlive-bin and texlive-xindy.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer 5fdae311a0
gnu: Add texlive-xindy. 
* gnu/packages/tex.scm (texlive-xindy): New variable.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer cf44f00b5b
gnu: Add texlive-cm-lgc. 
* gnu/packages/tex.scm (texlive-cm-lgc): New variable.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer e2c5700032
gnu: texlive-latex-geometry: Propagate texlive-latex-graphics. 
* gnu/packages/tex.scm (texlive-latex-geometry)
[propagated-inputs]: Add texlive-latex-graphics.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer 8cdad3484c
download: Add a mirror for CTAN. 
* guix/download.scm (%mirrors)[ctan]: New entry.
 2022-05-12 12:45:49 -04:00
Maxim Cournoyer ee96537d0c
gnu: Add texlive-cbfonts. 
* gnu/packages/tex.scm (texlive-cbfonts): New variable.
 2022-05-12 12:45:48 -04:00
Maxim Cournoyer 75646d51c2
gnu: Add texlive-cbfonts-fd. 
* gnu/packages/tex.scm (texlive-cbfonts-fd): New variable.
 2022-05-12 12:45:48 -04:00
Maxim Cournoyer 1ee15c8d68
gnu: texlive-polyglossia: Rename and fix package. 
Fixes <https://issues.guix.gnu.org/35780>.

* gnu/packages/tex.scm (texlive-latex-polyglossia): Rename to...
(texlive-polyglossia): ... this.  Inherit from a simple-texlive-package
package.
[version, source, build-system]: Remove field, now inherited.
[outputs]: New field.
[arguments]: Add the #:tex-format and #:phases arguments.
[native-inputs, propagated-inputs]: New fields.
[description]: Expound description.

Reported-by: Josh Holland
 2022-05-12 12:45:48 -04:00
Maxim Cournoyer cea6ff3d80
gnu: texlive-fontspec: Add missing propagated inputs. 
* gnu/packages/tex.scm (texlive-fontspec)
[propagated-inputs]: Add texlive-cm and texlive-lm.
 2022-05-12 12:45:48 -04:00
Maxim Cournoyer d09edfec5f
gnu: Add python-sphinx-sitemap. 
* gnu/packages/sphinx.scm (python-sphinx-sitemap): New variable.
 2022-05-12 12:45:48 -04:00
Maxim Cournoyer 28b602d0f6
gnu: Add python-sphinx-theme-builder. 
* gnu/packages/sphinx.scm (python-sphinx-theme-builder): New variable.
 2022-05-12 12:45:47 -04:00