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78985 commits

Author SHA1 Message Date
zimoun 32ae36e96f
gnu: r-fastseg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
2021-05-31 15:37:58 +02:00
zimoun 9644745692
gnu: r-annotationhub: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here...
* gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
2021-05-31 15:37:58 +02:00
zimoun dfe6224f5f
gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here.
2021-05-31 15:37:58 +02:00
zimoun f6f43a2d40
gnu: r-edaseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-edaseq): Move from here...
* gnu/packages/bioconductor.scm (r-edaseq): ...to here.
2021-05-31 15:37:58 +02:00
zimoun ef954bb488
gnu: r-deseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
2021-05-31 15:37:58 +02:00
zimoun bb118f20fe
gnu: r-aroma-light: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here...
* gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
2021-05-31 15:37:58 +02:00
zimoun 7756e08b44
gnu: r-mzid: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-mzid): Move from here...
* gnu/packages/bioconductor.scm (r-mzid): ...to here.
2021-05-31 15:37:58 +02:00
zimoun ad46c8aa7f
gnu: r-pcamethods: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-pcamethods): Move from here...
* gnu/packages/bioconductor.scm (r-pcamethods): ...to here.
2021-05-31 15:37:57 +02:00
zimoun d7fa9c1ffd
gnu: r-genomationdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31 15:37:55 +02:00
zimoun f8fe5497c7
gnu: r-genomation: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomation): Move from here...
* gnu/packages/bioconductor.scm (r-genomation): ...to here.
2021-05-31 15:36:32 +02:00
zimoun f3b50aa4fd
gnu: r-go-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
2021-05-31 15:35:53 +02:00
zimoun 14fb30e5f6
gnu: r-seqpattern: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
2021-05-31 15:35:30 +02:00
zimoun b832fddbfc
gnu: r-impute: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-impute): Move from here...
* gnu/packages/bioconductor.scm (r-impute): ...to here.
2021-05-31 15:34:45 +02:00
zimoun a2a1d86a77
gnu: r-samr: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
2021-05-31 15:34:45 +02:00
zimoun 4f030cc0db
gnu: r-msnbase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
2021-05-31 15:34:44 +02:00
zimoun 8c7c78bfce
gnu: r-msnid: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-msnid): Move from here...
* gnu/packages/bioconductor.scm (r-msnid): ...to here.
2021-05-31 15:34:44 +02:00
zimoun 537d48d869
gnu: r-bsgenome: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
2021-05-31 15:34:44 +02:00
zimoun 90bbab5cff
gnu: r-topgo: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
2021-05-31 15:34:44 +02:00
zimoun f78ff75b41
gnu: r-genomicfeatures: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
2021-05-31 15:34:44 +02:00
zimoun a88230a1bc
gnu: r-rtracklayer: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here...
* gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
2021-05-31 15:34:44 +02:00
zimoun ca1a015777
gnu: r-genomicalignments: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here...
* gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
2021-05-31 15:34:39 +02:00
Efraim Flashner d2d1f8bfae
gnu: Add julia-prettytables.
* gnu/packages/julia-xyz.scm (julia-prettytables): New variable.
2021-05-31 12:54:49 +03:00
Efraim Flashner 9bb2e649a6
gnu: Add julia-formatting.
* gnu/packages/julia-xyz.scm (julia-formatting): New variable.
2021-05-31 12:54:49 +03:00
Efraim Flashner adedfd0773
gnu: Add julia-typedtables.
* gnu/packages/julia-xyz.scm (julia-typedtables): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner f34f8a3d22
gnu: Add julia-weakrefstrings.
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner 9f92c8b51f
gnu: Add julia-pooledarrays.
* gnu/packages/julia-xyz.scm (julia-pooledarrays): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner 4541cda7d7
gnu: Add julia-indirectarrays.
* gnu/packages/julia-xyz.scm (julia-indirectarrays): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner a33695945c
gnu: Add julia-rangearrays.
* gnu/packages/julia-xyz.scm (julia-rangearrays): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner 2262f79917
gnu: Add julia-graphics.
* gnu/packages/julia-xyz.scm (julia-graphics): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner ea03851b01
gnu: Add julia-mappedarrays.
* gnu/packages/julia-xyz.scm (julia-mappedarrays): New variable.
2021-05-31 12:54:48 +03:00
Efraim Flashner 6a2d36c734
gnu: Add julia-tensorcore.
* gnu/packages/julia-xyz.scm (julia-tensorcore): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner 277fef2026
gnu: Add julia-quadmath.
* gnu/packages/julia-xyz.scm (julia-quadmath): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner f273a4b799
gnu: Add julia-mocking.
* gnu/packages/julia-xyz.scm (julia-mocking): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner 73b6f78c98
gnu: Add julia-exprtools.
* gnu/packages/julia-xyz.scm (julia-exprtools): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner 2615a8bad5
gnu: Add julia-optimtestproblems.
* gnu/packages/julia-xyz.scm (julia-optimtestproblems): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner fa945a540c
gnu: Add julia-matrixfactorizations.
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner 6dd2634da4
gnu: Add julia-arraylayouts.
* gnu/packages/julia-xyz.scm (julia-arraylayouts): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner f7f1efeaa7
gnu: Add julia-statsapi.
* gnu/packages/julia-xyz.scm (julia-statsapi): New variable.
2021-05-31 12:54:47 +03:00
Efraim Flashner 2bd2406cd9
gnu: Add julia-tables.
* gnu/packages/julia-xyz.scm (julia-tables): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner db2bfcb90d
gnu: Add julia-missings.
* gnu/packages/julia-xyz.scm (julia-missings): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner 209a80c109
gnu: Add julia-queryoperators.
* gnu/packages/julia-xyz.scm (julia-queryoperators): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner a61e13f777
gnu: Add julia-tableshowutils.
* gnu/packages/julia-xyz.scm (julia-tableshowutils): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner e886181bb6
gnu: Add julia-datavalues.
* gnu/packages/julia-xyz.scm (julia-datavalues): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner 3f40ba72c6
gnu: Add julia-tabletraits.
* gnu/packages/julia-xyz.scm (julia-tabletraits): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner 43f26eaeaa
gnu: Add julia-iteratorinterfaceextensions.
* gnu/packages/julia-xyz.scm (julia-iteratorinterfaceextensions): New variable.
2021-05-31 12:54:46 +03:00
Efraim Flashner 21df298ec9
gnu: Add julia-datavalueinterfaces.
* gnu/packages/julia-xyz.scm (julia-datavalueinterfaces): New variable.
2021-05-31 12:54:45 +03:00
Efraim Flashner ccbf9c450e
gnu: Add julia-dataapi.
* gnu/packages/julia-xyz.scm (julia-dataapi): New variable.
2021-05-31 12:54:45 +03:00
Hartmut Goebel c85edf2ca4
gnu: java-pep-adapter 2.1.23.
* gnu/packages/pep.scm (java-pep-adapter): Update to 2.1.23.
  [source]: Switch to new git repo.
  [arguments]<make-flags>: Enable release-build, use new target names.
  [arguments]<phases>{fix-includes}: Remove phase.
  {pin-shared-lib-path}: Update file paths.
  {build-codegen}: New phase.
  {install}: Use "(install)".
  [native-inputs]: Add graphviz.
  [inputs]: Fix input util-linux.
2021-05-31 10:45:54 +02:00
Hartmut Goebel 140087faa5
gnu: python-pep-adapter: Update to 2.1.3.
* gnu/packages/pep.scm (python-pep-adapter): Update to 2.1.3.
  [source]: Switch to new git repo.
  [arguments]<phases>{remove-wheel-requirement}: New phase.
  [native-inputs]: Add python-pytest and python-pytest-forked.
  [inputs]: Remove asn1c, add python-setuptools-scm. util-linux.
2021-05-31 10:45:53 +02:00
Hartmut Goebel c178f859b5
gnu: libpEpAdapter: Update to 2.1.21.
* gnu/packages/pep.scm (libpEpAdapter): Update to 2.1.21.
  [source]: Swicht to new git repo.
  [arguments]<make-flags>: Enable release-build.
2021-05-31 10:45:53 +02:00