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Bruno Victal 2e7516168e
services: base: Deprecate 'udev-service' procedure. 
* doc/guix.texi (Base Services): Replace udev-service with udev-service-type.
Document <udev-configuration>. Use @defun @-commands for udev-rules-service,
udev-rule and file->udev-rule.
* gnu/services/base.scm (udev-service): Deprecate procedure.
* gnu/system/install.scm (%installation-services): Use udev-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal 6edacf2491
services: base: Deprecate 'syslog-service' procedure. 
* doc/guix.texi (Base Services): Replace syslog-service with syslog-service-type.
* gnu/services/base.scm (%default-syslog.conf): Place before <syslog-configuration>.
(syslog-service-type): Set default value.
(syslog-service): Deprecate procedure.
(%base-services): Use syslog-service-type.
* gnu/system/hurd.scm (%base-services/hurd): Ditto.
* gnu/system/install.scm (%installation-services): Ditto.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal 98e9dc6ab7
services: base: Deprecate 'nscd-service' procedure. 
* doc/guix.texi (Application Setup): Compress @cindex entries.
(Base Services): Compress @cindex entries. Delete %nscd-default-configuration.
Replace 'nscd-service' with 'nscd-service-type'.
* gnu/services/base.scm (%nscd-default-configuration): Deprecate variable.
(nscd-service): Deprecate procedure.
* gnu/system/install.scm (%installation-services): Use nscd-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal 5bd5e77281
doc: kmscon-service-type: Use @defvar @-command. 
* doc/guix.texi (Base Services): Use @defvar @-command for kmscon-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal 4892c0186e
services: base: Deprecate 'agetty-service' procedure. 
* doc/guix.texi (Base Services): Replace agetty-service with
agetty-service-type.
* gnu/services/base.scm (agetty-service): Deprecate procedure.
* gnu/system/examples/beaglebone-black.tmpl
(operating-system)[services]: Use agetty-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal ad665a38fc
services: base: Deprecate 'mingetty-service' procedure. 
* doc/guix.texi (Base Services): Replace mingetty-service with
mingetty-service-type.
* gnu/services/base.scm (mingetty-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal 6dd635b4cf
services: base: Deprecate 'login-service' procedure. 
* doc/guix.texi (Base Services): Replace with login-service-type.
* gnu/services/base.scm (login-service): Deprecate procedure.
* gnu/system/install.scm (%installation-services): Use login-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:32 +01:00
Bruno Victal cb00e600ff
services: base: Deprecate 'host-name-service' procedure. 
* doc/guix.texi (operating-system Reference): Reorder cross-reference.
Add an anchor to be used ...
(Base services): ... here by host-name-service-type. Document
host-name-service-type.
* gnu/services/base.scm: Export host-name-service-type.
(host-name-service): Deprecate procedure.
* gnu/system.scm (operating-system-default-essential-services): Use
host-name-service-type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 17:55:31 +01:00
Navid Afkhami c6480edbe3
gnu: Add r-seurat-utils. 
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 03ef0914d5
gnu: Add r-hgnchelper. 
* gnu/packages/cran.scm (r-hgnchelper): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 9aad3dfd7b
gnu: Add r-tictoc. 
* gnu/packages/bioinformatics.scm (r-tictoc): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 573b65f51e
gnu: Add r-ggexpress. 
* gnu/packages/bioinformatics.scm (r-ggexpress): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami fd099793c8
gnu: Add r-markdownreports. 
* gnu/packages/bioinformatics.scm (r-markdownreports): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 8eb8af7e30
gnu: Add r-markdownhelpers. 
* gnu/packages/bioinformatics.scm (r-markdownhelpers): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami ba47b0fceb
gnu: Add r-codeandroll2. 
* gnu/packages/bioinformatics.scm (r-codeandroll2): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 877e2e7cf3
gnu: Add r-readwriter. 
* gnu/packages/bioinformatics.scm (r-readwriter): New variable.
 2023-03-03 15:11:43 +01:00
Navid Afkhami 351de7426c
gnu: Add r-stringendo. 
* gnu/packages/bioinformatics.scm (r-stringendo): New variable.
 2023-03-03 15:11:42 +01:00
Sharlatan Hellseher 6385070190
gnu: Add julia-astrotime. 
* gnu/packages/julia-xyz.scm (julia-astrotime): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:50 +01:00
Sharlatan Hellseher 39f02b5760
gnu: Add julia-muladdmacro. 
* gnu/packages/julia-xyz.scm (julia-muladdmacro): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:49 +01:00
Sharlatan Hellseher 549c227f3c
gnu: Add julia-itemgraphs. 
* gnu/packages/julia-xyz.scm (julia-itemgraphs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:47 +01:00
Sharlatan Hellseher 16c7becdc7
gnu: Add julia-lightgraphs. 
* gnu/packages/julia-xyz.scm (julia-lightgraphs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:46 +01:00
Sharlatan Hellseher 7f53aa7aa8
gnu: Add julia-arnoldimethod. 
* gnu/packages/julia-xyz.scm (julia-arnoldimethod): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:45 +01:00
Sharlatan Hellseher a6fc3bc163
gnu: Add julia-inflate. 
* gnu/packages/julia-xyz.scm (julia-inflate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:43 +01:00
Sharlatan Hellseher b7804b473f
gnu: Add julia-earthorientation. 
* gnu/packages/julia-xyz.scm (julia-earthorientation): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:40 +01:00
Sharlatan Hellseher a0ca88b1a6
gnu: Add julia-remotefiles. 
* gnu/packages/julia-xyz.scm (julia-remotefiles): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:37 +01:00
Sharlatan Hellseher f808ce789d
gnu: Add julia-optionaldata. 
* gnu/packages/julia-xyz.scm (julia-optionaldata): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:33 +01:00
Sharlatan Hellseher e21c19b2ad
gnu: Add julia-leapseconds. 
* gnu/packages/julia-xyz.scm (julia-leapseconds): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:30:24 +01:00
Ludovic Courtès 58f20fa818
git-download: Apply Git attributes on checkouts coming from SWH. 
Fixes a bug whereby CR/LF conversion, for instance, would not be applied
on Git repositories retrieved from SWH:

  https://sympa.inria.fr/sympa/arc/swh-devel/2023-03/msg00000.html

Reported by Simon Tournier <simon.tournier@inserm.fr>.
Suggested by Valentin Lorentz <valentin.lorentz@inria.fr>.
Co-authored by Simon Tournier <simon.tournier@inserm.fr>.

* guix/git-download.scm (git-fetch)[build]: Add Git operations conditioned by
'.gitattributes' on the result from SWH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-03 12:28:22 +01:00
Navid Afkhami 4f681cdbc2
gnu: Add r-oscope. 
* gnu/packages/bioconductor.scm (r-oscope): New variable.
 2023-03-03 12:04:24 +01:00
Guillaume Le Vaillant 98cac9dcab
gnu: cl-tripod: Fix build. 
* gnu/packages/lisp-xyz.scm (sbcl-tripod)[arguments]: Use the 'assoc-ref' form
  for the bin output.
  (cl-tripod)[outputs]: Remove bin.
  (ecl-tripod)[outputs]: Remove bin.
  [arguments]: Remove 'build-program' phase.
 2023-03-03 10:38:41 +01:00
Guillaume Le Vaillant a359b744ce
gnu: eisl: Update to 2.72. 
* gnu/packages/lisp.scm (eisl): Update to 2.72.
  [arguments]: Update 'fix-paths' phase.
 2023-03-03 09:52:52 +01:00
Guillaume Le Vaillant d5e41d7166
gnu: gcl: Update to 2.6.14. 
* gnu/packages/lisp.scm (gcl): Update to 2.6.14.
 2023-03-03 09:52:52 +01:00
Guillaume Le Vaillant dfc5d6628f
gnu: sbcl: Update to 2.3.2. 
* gnu/packages/lisp.scm (sbcl): Update to 2.3.2.
 2023-03-03 09:52:51 +01:00
Winter ea870a70e9
gnu: fish: Update to 3.6.0. 
* gnu/packages/shells.scm (fish): Update to 3.6.0.
[source]: Remove snippet, as the bundled PCRE2 sources have been
removed (see CHANGELOG.rst).

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2023-02-26 01:00:09 +01:00
Tobias Geerinckx-Rice 4ef9a5dd5e
file-systems: Validate 'no-diratime flag. 
This follows up on commit c077345539, and
adds a comment to avoid this in future.

* gnu/system/file-systems.scm (invalid-file-system-flags):
Add 'no-diratime to the list of KNOWN-FLAGS.
 2023-02-26 01:00:07 +01:00
Josselin Poiret 997b93cc4a
gnu: go-github-com-robfig-cron-1.2: Move to (gnu packages golang). 
Because (gnu packages golang) and (gnu packages check) use each other, this
avoids an undefined symbol due to a module dependency cycle.

* gnu/packages/check.scm (go-github-com-robfig-cron-1.2): Move to...
* gnu/packages/golang.scm (go-github-com-robfig-cron-1.2): ...here.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2023-02-26 01:00:00 +01:00
Maxim Cournoyer 89e5f3f384
gnu: make-mozilla-with-l10n: Use the copy-build-system. 
Fixes <https://issues.guix.gnu.org/61742>.

* gnu/packages/gnuzilla.scm (make-mozilla-with-l10n): Rewrite to use the
copy-build-system.

Reported-by: Feng Shu <tumashu@163.com>
 2023-03-02 16:03:57 -05:00
Antero Mejr b2200e3488
gnu: grimshot: Correct man page path. 
* gnu/packages/wm.scm (grimshot)[arguments]: Remove 'usr/' from man page path.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-03-02 15:01:39 -05:00
Mădălin Ionel Patrașcu 5dae9d2683
gnu: Add r-mmuphin. 
* gnu/packages/bioconductor.scm (r-mmuphin): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-03-02 20:11:06 +01:00
Jack Hill ffb756e8c0
gnu: python-acme, certbot: Update to 2.3.0. 
* gnu/packages/tls.scm (python-acme): Update to 2.3.0.
(certbot)[source]: Update hash.
[propagated-inputs]: Remove python-zope-interface and
python-zope-component.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-03-02 13:49:46 -05:00
Efraim Flashner e9c1ea84fc
gnu: grub-efi: Remove test inputs. 
* gnu/packages/bootloaders.scm (grub-efi)[native-inputs]: Remove parted,
qemu-minimal, xorriso.
 2023-03-02 16:13:56 +02:00
Mădălin Ionel Patrașcu a7763e067d
gnu: Add r-chromomap. 
* gnu/packages/cran.scm (r-chromomap): New variable.
 2023-03-02 12:58:26 +01:00
Efraim Flashner 06f49a77a8
gnu: libmicrohttpd: Update to 0.9.76. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.76.
 2023-03-02 11:48:11 +02:00
Efraim Flashner 4acda21217
gnu: gama: Update to 2.24. 
* gnu/packages/gps.scm (gama): Update to 2.24.
 2023-03-02 11:48:10 +02:00
Juliana Sims af95f2d8f9
gnu: pcmanfm-qt: Update to 1.2.1. 
* gnu/packages/lxqt.scm (pcmanfm-qt): Update to 1.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-02 13:59:38 +08:00
Juliana Sims 2db95ac735
gnu: libfm-qt: Update to 1.2.1. 
* gnu/packages/lxqt.scm (libfm-qt): Update to 1.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-02 13:59:31 +08:00
Juliana Sims 369b2a56a9
gnu: lxqt-panel: Update to 1.2.1. 
* gnu/packages/lxqt.scm (lxqt-panel): Update to 1.2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-02 13:59:21 +08:00
Ryan Sundberg 03b463b68b
gnu: FFmpeg: Enable libwebp. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libwebp.
[arguments]: Pass '--enable-libwebp' to #:configure-flags.
(ffmpeg-2.8)[inputs]: Remove libwebp.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2023-03-01 23:02:19 -05:00
宋文武 e7e1f58563
gnu: gimp: Don't retain reference on GCC. 
Partly fixes <https://issues.guix.gnu.org/57677>.

* gnu/packages/gimp.scm (gimp)[arguments]: Add #:modules and #:phases.
 2023-03-02 11:32:20 +08:00
宋文武 c53e8404e8
gnu: Remove broken xf86 video drivers. 
Those packages build failed with current xorg-server:
  openchrome: multiple definition of some functions.
  other: missing headers for xf86RamDac.h, IBM.h, etc.

* gnu/packages/xorg.scm (xf86-video-glint, xf86-video-openchrome
xf86-video-suncg6, xf86-video-sunffb, xf86-video-tga
xf86-video-trident): Remove packages.
* gnu/packages/patches/xf86-video-tga-remove-mibstore.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-03-02 11:29:17 +08:00