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gnu: Add r-chromomap.

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* gnu/packages/cran.scm (r-chromomap): New variable.
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Mădălin Ionel Patrașcu 2023-02-28 01:07:34 +01:00 committed by Ricardo Wurmus
parent 06f49a77a8
commit a7763e067d
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gnu/packages/cran.scm
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@ -306,6 +306,42 @@ (define-public r-changepoint
;; Any version of the GPL.
(license license:gpl3+)))
;; The package sources include multiple non-minified JavaScript files and the
;; v5.1.0 variant of d3.js. The d3.js file is not minified.
(define-public r-chromomap
(package
(name "r-chromomap")
(version "4.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "chromoMap" version))
(sha256
(base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"))))
(properties `((upstream-name . "chromoMap")))
(build-system r-build-system)
(propagated-inputs (list r-htmltools r-htmlwidgets))
(native-inputs (list r-knitr))
(home-page "https://cran.r-project.org/package=chromoMap")
(synopsis "Interactive genomic visualization of biological data")
(description
"This package provides interactive, configurable and graphics
visualization of the chromosome regions of any living organism allowing users
to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It
introduces a special plot viz. the \"chromosome heatmap\" that, in addition to
mapping elements, can visualize the data associated with chromosome
elements (like gene expression) in the form of heat colors. Users can
investigate the detailed information about the mappings (like gene names or
total genes mapped on a location) or can view the magnified single or double
stranded view of the chromosome at a location showing each mapped element in
sequential order. The package provide multiple features like visualizing
multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and
labelling. The plots can be saved as HTML documents that can be customized
and shared easily. In addition, you can include them in R Markdown or in R
Shiny applications.")
(license (list license:gpl3
license:isc)))) ;for bundled d3js
(define-public r-collections
(package
(name "r-collections")