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Author SHA1 Message Date
zimoun
f8fe5497c7
gnu: r-genomation: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomation): Move from here...
* gnu/packages/bioconductor.scm (r-genomation): ...to here.
 2021-05-31 15:36:32 +02:00
zimoun
f3b50aa4fd
gnu: r-go-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
 2021-05-31 15:35:53 +02:00
zimoun
14fb30e5f6
gnu: r-seqpattern: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
 2021-05-31 15:35:30 +02:00
zimoun
b832fddbfc
gnu: r-impute: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-impute): Move from here...
* gnu/packages/bioconductor.scm (r-impute): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun
a2a1d86a77
gnu: r-samr: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun
4f030cc0db
gnu: r-msnbase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
8c7c78bfce
gnu: r-msnid: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnid): Move from here...
* gnu/packages/bioconductor.scm (r-msnid): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
537d48d869
gnu: r-bsgenome: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
90bbab5cff
gnu: r-topgo: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
f78ff75b41
gnu: r-genomicfeatures: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
a88230a1bc
gnu: r-rtracklayer: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here...
* gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun
ca1a015777
gnu: r-genomicalignments: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here...
* gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
 2021-05-31 15:34:39 +02:00
Efraim Flashner
d2d1f8bfae
gnu: Add julia-prettytables. 
* gnu/packages/julia-xyz.scm (julia-prettytables): New variable.
 2021-05-31 12:54:49 +03:00
Efraim Flashner
9bb2e649a6
gnu: Add julia-formatting. 
* gnu/packages/julia-xyz.scm (julia-formatting): New variable.
 2021-05-31 12:54:49 +03:00
Efraim Flashner
adedfd0773
gnu: Add julia-typedtables. 
* gnu/packages/julia-xyz.scm (julia-typedtables): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
f34f8a3d22
gnu: Add julia-weakrefstrings. 
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
9f92c8b51f
gnu: Add julia-pooledarrays. 
* gnu/packages/julia-xyz.scm (julia-pooledarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
4541cda7d7
gnu: Add julia-indirectarrays. 
* gnu/packages/julia-xyz.scm (julia-indirectarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
a33695945c
gnu: Add julia-rangearrays. 
* gnu/packages/julia-xyz.scm (julia-rangearrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
2262f79917
gnu: Add julia-graphics. 
* gnu/packages/julia-xyz.scm (julia-graphics): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
ea03851b01
gnu: Add julia-mappedarrays. 
* gnu/packages/julia-xyz.scm (julia-mappedarrays): New variable.
 2021-05-31 12:54:48 +03:00
Efraim Flashner
6a2d36c734
gnu: Add julia-tensorcore. 
* gnu/packages/julia-xyz.scm (julia-tensorcore): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
277fef2026
gnu: Add julia-quadmath. 
* gnu/packages/julia-xyz.scm (julia-quadmath): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
f273a4b799
gnu: Add julia-mocking. 
* gnu/packages/julia-xyz.scm (julia-mocking): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
73b6f78c98
gnu: Add julia-exprtools. 
* gnu/packages/julia-xyz.scm (julia-exprtools): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
2615a8bad5
gnu: Add julia-optimtestproblems. 
* gnu/packages/julia-xyz.scm (julia-optimtestproblems): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
fa945a540c
gnu: Add julia-matrixfactorizations. 
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
6dd2634da4
gnu: Add julia-arraylayouts. 
* gnu/packages/julia-xyz.scm (julia-arraylayouts): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
f7f1efeaa7
gnu: Add julia-statsapi. 
* gnu/packages/julia-xyz.scm (julia-statsapi): New variable.
 2021-05-31 12:54:47 +03:00
Efraim Flashner
2bd2406cd9
gnu: Add julia-tables. 
* gnu/packages/julia-xyz.scm (julia-tables): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
db2bfcb90d
gnu: Add julia-missings. 
* gnu/packages/julia-xyz.scm (julia-missings): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
209a80c109
gnu: Add julia-queryoperators. 
* gnu/packages/julia-xyz.scm (julia-queryoperators): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
a61e13f777
gnu: Add julia-tableshowutils. 
* gnu/packages/julia-xyz.scm (julia-tableshowutils): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
e886181bb6
gnu: Add julia-datavalues. 
* gnu/packages/julia-xyz.scm (julia-datavalues): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
3f40ba72c6
gnu: Add julia-tabletraits. 
* gnu/packages/julia-xyz.scm (julia-tabletraits): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
43f26eaeaa
gnu: Add julia-iteratorinterfaceextensions. 
* gnu/packages/julia-xyz.scm (julia-iteratorinterfaceextensions): New variable.
 2021-05-31 12:54:46 +03:00
Efraim Flashner
21df298ec9
gnu: Add julia-datavalueinterfaces. 
* gnu/packages/julia-xyz.scm (julia-datavalueinterfaces): New variable.
 2021-05-31 12:54:45 +03:00
Efraim Flashner
ccbf9c450e
gnu: Add julia-dataapi. 
* gnu/packages/julia-xyz.scm (julia-dataapi): New variable.
 2021-05-31 12:54:45 +03:00
Hartmut Goebel
c85edf2ca4
gnu: java-pep-adapter 2.1.23. 
* gnu/packages/pep.scm (java-pep-adapter): Update to 2.1.23.
  [source]: Switch to new git repo.
  [arguments]<make-flags>: Enable release-build, use new target names.
  [arguments]<phases>{fix-includes}: Remove phase.
  {pin-shared-lib-path}: Update file paths.
  {build-codegen}: New phase.
  {install}: Use "(install)".
  [native-inputs]: Add graphviz.
  [inputs]: Fix input util-linux.
 2021-05-31 10:45:54 +02:00
Hartmut Goebel
140087faa5
gnu: python-pep-adapter: Update to 2.1.3. 
* gnu/packages/pep.scm (python-pep-adapter): Update to 2.1.3.
  [source]: Switch to new git repo.
  [arguments]<phases>{remove-wheel-requirement}: New phase.
  [native-inputs]: Add python-pytest and python-pytest-forked.
  [inputs]: Remove asn1c, add python-setuptools-scm. util-linux.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel
c178f859b5
gnu: libpEpAdapter: Update to 2.1.21. 
* gnu/packages/pep.scm (libpEpAdapter): Update to 2.1.21.
  [source]: Swicht to new git repo.
  [arguments]<make-flags>: Enable release-build.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel
85d80283b6
gnu: pep-engine: Update to 2.1.34. 
* gnu/packages/pep.scm (fdik-libetpan): Update to current development
  version. [source]: Switch to pep.foundation.
  (pep-engine): Update to 2.1.34. [source]: Switch to new git repo.
  [arguments]<make-flags>: Enable release-build.
  [inputs]: Use normal sequoia.
* gnu/packages/sequoia.scm (sequoia4pEp): Remove variable.
 2021-05-31 10:45:53 +02:00
Hartmut Goebel
c7f023723c
gnu: yml2: Update to 2.7.0. 
* gnu/packages/pep.scm (yml2): Update to 2.7.0.
  [source]: Switch to new git repo.
 2021-05-31 10:45:53 +02:00
Roel Janssen
47f31c0afe
gnu: Add python-pyflow. 
* gnu/packages/python-science.scm (python-pyflow): New variable.
 2021-05-31 09:30:51 +02:00
Roel Janssen
ad7c7b5bf6
gnu: Add python-google. 
* gnu/packages/python-web.scm (python-google): New variable.
 2021-05-31 09:21:45 +02:00
Efraim Flashner
221141ca70
gnu: gnuastro: Update to 0.15. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.15.
 2021-05-31 09:44:47 +03:00
Maxim Cournoyer
b9ac7d9aaa
doc: Add a note about networking requirements for SSH access to VMs. 
Fixes <https://issues.guix.gnu.org/48739>.  It may seem silly, but when not
realizing this firsthand, it can be quite surprising and thus not obvious to
troubleshoot.  Thanks to Eric Brown for their insightful comments on the
tracker.

* doc/guix.texi (Running Guix in a VM): Add a note that networking support
must be available in the Guix System operating system declaration used for the
VM.
 2021-05-30 23:33:36 -04:00
Tobias Geerinckx-Rice
6086e6ed1a
gnu: r-benchmarkmedata: Fix typo in description. 
* gnu/packages/cran.scm (r-benchmarkmedata)[description]: Fix typo.
 2021-05-30 15:13:41 +02:00
Tobias Geerinckx-Rice
d127fdd0e7
doc: Fix typos. 
* doc/contributing.texi (Translating Guix): Fix ‘runnig’ typo.  Replace
‘target’ with ‘command’ to match the verb.  Fix ‘refered’ and ‘formating’
too.
 2021-05-30 15:13:40 +02:00
Tobias Geerinckx-Rice
836f5fc4c5
gnu: zoxide: Fix typo in synopsis. 
* gnu/packages/rust-apps.scm (zoxide)[synopsis]: Fix typo.
 2021-05-30 15:13:40 +02:00