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Author SHA1 Message Date
Ludovic Courtès ce0f1b1eef
gnu: guix: Update to 619f918. 
* gnu/packages/package-management.scm (guix): Update to 619f918.
 2020-04-28 23:28:17 +02:00
Efraim Flashner 0b25812872
gnu: openldap: Fix CVE-2020-12243. 
* gnu/packages/openldap.scm (openldap)[replacement]: New field.
(openldap/fixed): New variable.
* gnu/packages/patches/openldap-CVE-2020-12243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-04-28 22:52:20 +03:00
Efraim Flashner cd8c419722
gnu: valgrind: Update source uri. 
* gnu/packages/valgrind.scm (valgrind)[source]: Remove valgrind host,
add sourceware host.
[home-page]: Use https.
 2020-04-28 22:33:40 +03:00
Pierre Neidhardt 27112236ce
gnu: sbcl: Update to 2.0.4. 
* gnu/packages/lisp.scm (sbcl): Update to 2.0.4.
 2020-04-28 21:10:46 +02:00
Pierre Neidhardt a84b7a4af5
gnu: sbcl-parenscript: Update to 2.7.1. 
* gnu/packages/lisp-xyz.scm (sbcl-parenscript): Update to 2.7.1.
 2020-04-28 21:10:46 +02:00
Diego Nicola Barbato 19e1f12ce4
gnu: emacs-telega: Test Emacs environment on startup. 
Print a more helpful error message when someone attempts to run Telega on an
incompatible Emacs (e.g a 32-bit Emacs without wide ints).

* gnu/packages/patches/emacs-telega-test-env.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:30 +03:00
Diego Nicola Barbato a663b7040c
gnu: emacs-telega: Build with emacs-wide-int on 32-bit systems. 
Fixes <https://bugs.gnu.org/39406>.
Reported by <lmedeiros@riseup.net>.

* gnu/packages/emacs-xyz.scm (emacs-telega)[native-inputs]: Replace emacs with
emacs-wide-int on 32-bit systems.  This is needed because Telega requires
64-bit wide ints.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:30 +03:00
Diego Nicola Barbato abbca232ca
gnu: Add emacs-wide-int. 
* gnu/packages/emacs.scm (emacs-wide-int): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:27 +03:00
Christopher Lemmer Webber b2c1d4a273
gnu: Add emacs-magit-annex. 
* gnu/packages/emacs-xyz.scm (emacs-magit-annex): New variable.
 2020-04-28 12:30:41 -04:00
Alexandros Theodotou ae0f26b8f4
gnu: lv2: Update to 1.18.0. 
* gnu/packages/audio.scm (lv2): Update to 1.18.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-28 18:20:28 +02:00
Nicolas Goaziou 3b33e0e4ba
gnu: kakoune: Update to 2020.01.16. 
* gnu/packages/text-editors.scm (kakoune): Update to 2020.01.16.
 2020-04-28 18:18:44 +02:00
John Soo 9615c8511f
gnu: emacs-evil-org: Update to 1.0.2. 
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 1.0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:30:50 +02:00
Joseph LaFreniere f15d324afa
gnu: emacs-sx: Update to 20191229. 
* gnu/packages/emacs-xyz.scm (emacs-sx): Update to 20191229.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:29:51 +02:00
Joseph LaFreniere b3d04190f4
gnu: Add emacs-toml-mode. 
* gnu/packages/emacs-xyz.scm (emacs-toml-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:27:47 +02:00
Marius Bakke 085948fbfc
gnu: ungoogled-chromium: Update to 81.0.4044.129-0.c2a89fb [security fixes]. 
This fixes CVE-2020-6462 and CVE-2020-6461.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.129.
(%ungoogled-revision): Set to c2a89fb6b5b559c826796c811741fa8ed3e11de8.
(%chromium-origin, %ungoogled-origin): Update hashes.
 2020-04-28 14:38:38 +02:00
Ricardo Wurmus 545e12f40d
gnu: Add variant-tools. 
* gnu/packages/bioinformatics.scm (variant-tools): New variable.
 2020-04-28 12:23:28 +02:00
Ricardo Wurmus 0b2c883828
gnu: Add hdf5-blosc. 
* gnu/packages/maths.scm (hdf5-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Ricardo Wurmus 9a2fcb6325
gnu: Add c-blosc. 
* gnu/packages/compression.scm (c-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Boris A. Dekshteyn 83812f34d7
gnu: Add kbdd-0.7.1 
* gnu/packages/xdisorg.scm (kbdd): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-28 11:51:06 +02:00
Pierre Neidhardt 8ac4be51de
gnu: ecl: Update to 20.4.24. 
* gnu/packages/lisp.scm (ecl): Update to 20.4.24.
[native-inputs]: Add texinfo to make the manual.
[license]: Set to lgpl2.1+.
 2020-04-28 11:47:46 +02:00
Pierre Neidhardt 143eaa82d6
gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:46 +02:00
Pierre Neidhardt 80d8c00c84
gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt 2666a3361e
gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt d27f033f97
gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt 8f46a9d67f
gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt 6a7f366864
gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt eac71f54fe
gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt ef3cc2d883
gnu: Add emacs-trashed. 
* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable.
 2020-04-28 11:47:45 +02:00
Guillaume Le Vaillant 62d45e463c
gnu: gnuradio-osmosdr: Add hackrf support. 
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf.
 2020-04-28 10:17:08 +02:00
Christopher Howard 79c4fb4f36
gnu: Add hackrf. 
* gnu/packages/radio.scm (hackrf): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2020-04-28 10:17:08 +02:00
Roel Janssen 0ae8505288
gnu: hpcguix-web: Use guile3.0-guix. 
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use
  guile3.0 inputs.
 2020-04-28 10:13:30 +02:00
Konrad Hinsen d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-28 09:34:29 +02:00
Ricardo Wurmus b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0. 
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 9c726c485a
gnu: r-hdf5array: Update to 1.14.4. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus cda0683295
gnu: r-seurat: Update to 3.1.5. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5.
[propagated-inputs]: Remove r-metap.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus ed720abc26
gnu: r-topicmodels: Update to 0.2-11. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 1d9e71ed29
gnu: r-stopwords: Update to 2.0. 
* gnu/packages/cran.scm (r-stopwords): Update to 2.0.
[propagated-inputs]: Add r-desc and r-usethis.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 2c439cae92
gnu: r-fda: Update to 5.1.4. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus e1fe5e9bed
gnu: r-abtest: Update to 0.2.1. 
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1.
[propagated-inputs]: Add r-qgam; remove r-vgam.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 169f9fe13a
gnu: Add r-qgam. 
* gnu/packages/cran.scm (r-qgam): New variable.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5ffe706b84
gnu: r-systemfonts: Update to 0.2.0. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0.
[inputs]: Remove freetype.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 8165bf6d90
gnu: r-dalex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0.
[propagated-inputs]: Add r-ibreakdown and r-ingredients.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 1816cb262c
gnu: r-rex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rex): Update to 1.2.0.
[propagated-inputs]: Remove r-magrittr.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 838ec254a0
gnu: r-optparse: Update to 1.6.6. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus bf4e440c19
gnu: r-sf: Update to 0.9-2. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5123ec7858
gnu: r-future-apply: Update to 1.5.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus c6eb1fe616
gnu: r-etm: Update to 1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus fbcbf8d586
gnu: r-future: Update to 1.17.0. 
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus d62d838bf9
gnu: r-protviz: Update to 0.6.4. 
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
 2020-04-28 08:44:03 +02:00