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Author SHA1 Message Date
Zheng junjie efff3fd879
gnu: Add zoxide. 
* gnu/packages/rust-apps.scm (zoxide): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:20:06 +02:00
Zheng junjie cba634e56c
gnu: Add rust-seq-macro-0.2. 
* gnu/packages/crates-io.scm (rust-seq-macro-0.2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:15:04 +02:00
Zheng junjie 8bdc62757d
gnu: Add rust-askama-0.10. 
* gnu/packages/crates-io.scm (rust-askama-0.10): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:14:51 +02:00
Zheng junjie 296b72db46
gnu: Add rust-askama-derive-0.10. 
* gnu/packages/crates-io.scm (rust-askama-derive-0.10): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:14:40 +02:00
Zheng junjie eb3799e822
gnu: Add rust-askama-shared-0.11. 
* gnu/packages/crates-io.scm (rust-askama-shared-0.11): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:14:27 +02:00
Zheng junjie a721db8e3b
gnu: Add rust-askama-escape-0.10. 
* gnu/packages/crates-io.scm (rust-askama-escape-0.10): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:14:12 +02:00
Zheng Junjie 0413240e3d
gnu: Add rust-clap-3. 
* gnu/packages/crates-io.scm (rust-clap-3): New variable.
(rust-clap-2): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:13:56 +02:00
Zheng Junjie c0371bd0b2
gnu: Add rust-clap-derive-3. 
* gnu/packages/crates-io.scm (rust-clap-derive-3): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:13:41 +02:00
Zheng Junjie d45b6d9d58
gnu: Add rust-strsim-0.10. 
* gnu/packages/crates-io.scm (rust-strsim-0.10): New variable.
(rust-strsim-0.9): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:13:28 +02:00
Zheng Junjie e881704787
gnu: Add rust-os-str-bytes-2. 
* gnu/packages/crates-io.scm (rust-os-str-bytes-2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:13:10 +02:00
Zheng Junjie 754d009a76
gnu: Add rust-textwrap-0.12. 
* gnu/packages/crates-io.scm (rust-textwrap-0.12): New variable.
(rust-textwrap-0.11): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:12:56 +02:00
Zheng Junjie 8de658d54a
gnu: Add rust-hyphenation-0.8. 
* gnu/packages/crates-io.scm (rust-hyphenation-0.8): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:12:42 +02:00
Zheng Junjie 510b9ff26f
gnu: Add rust-hyphenation-commons-0.8. 
* gnu/packages/crates-io.scm (rust-hyphenation-commons-0.8): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:12:29 +02:00
Zheng Junjie 12bdba7035
gnu: Add rust-ordered-float-2. 
* gnu/packages/crates-io.scm (rust-ordered-float-2): New variable.
(rust-ordered-float-1): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 15:12:08 +02:00
Xinglu Chen da08378aa4
gnu: emacs-shell-command+: Use Git repo instead of ELPA URL. 
* emacs-xyz.scm (emacs-shell-command+)[source]: Use Git repository instead of
  the unstable ELPA URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:49:00 +02:00
Xinglu Chen a866667f55
gnu: Add emacs-org-inline-pdf. 
* gnu/packages/emacs-xyz.scm (emacs-org-inline-pdf): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:47:46 +02:00
Xinglu Chen bc251bc7e2
gnu: emacs-transient: Update to 0.3.4. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.4.
[arguments]<#:phases>: Don’t return #t, this will be redundant once
core-updates gets merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:46:19 +02:00
Xinglu Chen a5c9843cfe
gnu: emacs-magit: Update to 3.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.0.0.
[arguments]<#:phases>: Don’t return #t, this will be redundant once the
core-updates branch has been merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:45:57 +02:00
Xinglu Chen 93a5505f12
gnu: emacs-forge: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-forge): Update to 0.2.0.
[arguments]<#:phases>: Don’t return #t at the end of phases, this will be
redundant once core-updates gets merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:44:19 +02:00
Efraim Flashner c5f7203e3e
gnu: minimap2: Install more files. 
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Add modules.
Adjust custom 'install phase to also install library, headers and a
pkg-config file.
 2021-05-26 15:22:10 +03:00
Efraim Flashner 36a90d0637
gnu: minimap2: Update to 2.18. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-05-26 15:22:10 +03:00
Lars-Dominik Braun b085abbeb8
gnu: Add r-bayesfactor. 
* gnu/packages/statistics.scm (r-bayesfactor): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun 3ea32f5bcf
gnu: Add r-effects. 
* gnu/packages/statistics.scm (r-effects): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun e53ecc6087
gnu: Add r-logspline. 
* gnu/packages/statistics.scm (r-logspline): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun 6c7aafbedf
gnu: Add r-kknn. 
* gnu/packages/statistics.scm (r-kknn): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun fef452b13f
gnu: Add r-hypergeo. 
* gnu/packages/cran.scm (r-hypergeo): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun 1af2da50bf
gnu: Add r-elliptic. 
* gnu/packages/cran.scm (r-elliptic): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun 1ae67e6735
gnu: Add r-contfrac. 
* gnu/packages/cran.scm (r-contfrac): New variable.
 2021-05-26 14:05:15 +02:00
Roel Janssen f921981536
gnu: Add r-decipher. 
* gnu/packages/bioconductor.scm (r-decipher): New variable.
 2021-05-26 13:31:20 +02:00
Roel Janssen 99873359ed
gnu: Add r-deepsnv. 
* gnu/packages/bioconductor.scm (r-deepsnv): New variable.
 2021-05-26 13:13:56 +02:00
Roel Janssen 834f649590
gnu: Add r-geneoverlap. 
* gnu/packages/bioconductor.scm (r-geneoverlap): New variable.
 2021-05-26 13:09:34 +02:00
Mathieu Othacehe 3d704fafba
gnu: cuirass: Update to 1.0.0-20.524b81d. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-20.524b81d.
 2021-05-26 11:48:26 +02:00
Guillaume Le Vaillant 63962f9b6c
gnu: Add minimodem. 
* gnu/packages/radio.scm (minimodem): New variable.
 2021-05-26 10:31:59 +02:00
Roel Janssen 94b8ad4490
gnu: Add r-chipseeker. 
* gnu/packages/bioconductor.scm (r-chipseeker): New variable.
 2021-05-26 10:21:32 +02:00
Roel Janssen 5aa68a9408
gnu: Add r-model4you. 
* gnu/packages/cran.scm (r-model4you): New variable.
 2021-05-26 10:00:51 +02:00
Roel Janssen 3f2a4b0980
gnu: Add r-pvclust. 
* gnu/packages/cran.scm (r-pvclust): New variable.
 2021-05-26 09:52:12 +02:00
Roel Janssen 9048e7f3b4
gnu: Add r-bsgenome-btaurus-ucsc-bostau8. 
* gnu/packages/bioconductor.scm (r-bsgenome-btaurus-ucsc-bostau8): New
  variable.
 2021-05-26 09:42:01 +02:00
Roel Janssen af163badb4
gnu: Add r-phantompeakqualtools. 
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): New variable.
 2021-05-26 09:34:37 +02:00
Roel Janssen b1fee8a003
gnu: Add r-spp. 
* gnu/packages/bioinformatics.scm (r-spp): New variable.
 2021-05-26 09:29:01 +02:00
Roel Janssen b84ead8c04
gnu: Add r-aneufinder. 
* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
 2021-05-26 09:13:54 +02:00
Roel Janssen 189311660b
gnu: Add r-aneufinderdata. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): New variable.
 2021-05-26 09:13:08 +02:00
Leo Famulari 458126a237
gnu: Add rsync 3.2.3. 
*  gnu/packages/rsync.scm (rsync-next): New variable.
 2021-05-25 16:32:52 -04:00
Leo Famulari d366557b7b
gnu: nginx: Update to 1.21.0 [fixes CVE-2021-23017]. 
* gnu/packages/web.scm (nginx, nginx-documentation): Update to 1.21.0.
 2021-05-25 12:44:09 -04:00
Efraim Flashner 0ffac75ece
gnu: qhull: Build position independent. 
* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build
code position independent.
 2021-05-25 17:24:58 +03:00
Mathieu Othacehe d2a8b72b2f
gnu: cuirass: Update to 1.0.0-19.e1382f0. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-19.e1382f0.
 2021-05-25 15:15:56 +02:00
Efraim Flashner c942e17c29
gnu: qhull: Link binaries to shared library. 
This drops the package size by nearly 60%.

* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link
binaries to shared library.
 2021-05-25 15:50:57 +03:00
Roel Janssen dc85100481
gnu: Add perl-set-intervaltree. 
* gnu/packages/perl.scm (perl-set-intervaltree): New variable.
 2021-05-25 14:31:06 +02:00
Roel Janssen ac30a53c6a
gnu: Add perl-log-message-simple 
* gnu/packages/perl.scm (perl-log-message-simple): New variable.
 2021-05-25 14:20:07 +02:00
Roel Janssen 5bfb84b8cf
gnu: Add perl-log-message. 
* gnu/packages/perl.scm (perl-log-message): New variable.
 2021-05-25 14:19:09 +02:00
Roel Janssen fe578ee51a
gnu: Add perl-extutils-manifest. 
* gnu/packages/perl.scm (perl-extutils-manifest): New variable.
 2021-05-25 14:08:34 +02:00