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Author SHA1 Message Date
Jack Hill e9981d5a95
gnu: dino: Update to 0.4.3. 
* gnu/packages/messaging.scm (dino): Update to 0.4.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-29 13:24:00 +01:00
Vagrant Cascadian 5f672aaa0c
gnu: lcsync: Update to 0.2.1. 
* gnu/packages/networking.scm (lcsync): Update to 0.2.1.
[arguments]: #:configure-flags Pass --prefix.
Drop 'remove-network-tests and 'remove-immintrin.h phase.
Add 'use-prefix-from-configure-in-doc-makefile phase.
[inputs]: Add lcrq.
[native-inputs]: Remove simde.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-29 13:23:28 +01:00
Vagrant Cascadian 3e354ea9bd
gnu: librecast: Update to 0.7-RC3. 
* gnu/packages/networking.scm (librecast): Update to 0.7-RC3.
[arguments]: Drop 'remove-network-tests phase.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-29 13:23:28 +01:00
TakeV 5e3e7c19d8
gnu: bundler: Update to 2.4.18. 
* gnu/packages/ruby.scm (bundler): Update to 2.4.18.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-29 13:19:20 +01:00
Christopher Baines c808af269e
gnu: guix-build-coordinator: Update to 0-88.cbded42. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-88.cbded42.
 2023-08-29 13:19:12 +01:00
Ludovic Courtès cf6abf50db
home: services: dicod, syncthing: Import (gnu home services shepherd). 
Fixes <https://issues.guix.gnu.org/65510>.

Without this import, 'shepherd-service-type' is not mapped, leading to
an error about missing 'system' target.

* gnu/home/services/dict.scm,
gnu/home/services/syncthing.scm: Add #:use-module clause.

Reported-by: Morgan Smith <Morgan.J.Smith@outlook.com>
 2023-08-29 11:42:16 +02:00
Nicolas Goaziou 715d203b41
gnu: Add texlive-subfiles. 
* gnu/packages/tex.scm (texlive-subfiles): New variable.
 2023-08-29 10:41:45 +02:00
Nicolas Goaziou c4819aecee
gnu: Add texlive-import. 
* gnu/packages/tex.scm (texlive-import): New variable.
 2023-08-29 10:41:45 +02:00
Nicolas Goaziou bef78ff5f3
gnu: Add texlive-svg. 
* gnu/packages/tex.scm (texlive-svg): New variable.
 2023-08-29 10:30:22 +02:00
Frank Pursel 541b1c3e74
gnu: Add ditaa. 
* gnu/packages/java-graphics.scm (ditaa): New variable.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2023-08-28 15:36:51 -07:00
Frank Pursel d0c508f451
gnu: Add java-libbatik. 
* gnu/packages/batik.scm (java-libbatik): New variable.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2023-08-28 15:36:48 -07:00
Frank Pursel 900ceef580
gnu: Add java-jericho-html. 
* gnu/packages/java-xml.scm (java-jericho-html): New variable.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2023-08-28 15:36:41 -07:00
Ricardo Wurmus 3335903d7d
gnu: r-tximeta: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 99ddc62840
gnu: r-dmrseq: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 7b93c6d88e
gnu: r-bionero: Update to 1.8.7. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.7.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 86f9555ef0
gnu: r-gviz: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 4ab9700e29
gnu: r-delayedmatrixstats: Update to 1.22.5. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.5.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus b200824114
gnu: r-scran: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 6567ce830f
gnu: r-scuttle: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 362f3cdb8e
gnu: r-s4arrays: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.5.
[propagated-inputs]: Add r-abind.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 790f0569f4
gnu: r-biocpkgtools: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 3602e0b41d
gnu: r-biocviews: Update to 1.68.2. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 55e0bd5c7a
gnu: r-flowworkspace: Update to 4.12.2. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus dc23a12566
gnu: r-rprotobuflib: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 5cc62530b9
gnu: r-ggcyto: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 36cf325b1e
gnu: r-flowcore: Update to 2.12.2. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus ceb698380c
gnu: r-ggtree: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 4998f1538b
gnu: r-treeio: Update to 1.24.3. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.3.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus b336a58135
gnu: r-matrixgenerics: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.3.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 59056368d0
gnu: r-diffbind: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 6346338d58
gnu: r-stringdb: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus ba4f688670
gnu: r-spectra: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus ce88bfafc3
gnu: r-raggedexperiment: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.24.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 8365b201f4
gnu: r-gsva: Update to 1.48.3. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.48.3.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus dcc2d9a843
gnu: r-genomicfeatures: Update to 1.52.2. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus c5ce710a4a
gnu: r-genomeinfodb: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus eca138fd06
gnu: r-dittoseq: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.1.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus 00d8ba65aa
gnu: r-affy: Update to 1.78.2. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.2.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus d3bebefa9b
gnu: r-dmrcate: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.1.
[propagated-inputs]: Add r-biomart.
 2023-08-28 22:15:47 +02:00
Ricardo Wurmus e868377a7d
gnu: r-densvis: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.3.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus d0f065d0b1
gnu: r-delayedarray: Update to 0.26.7. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.7.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus 1119ecbd79
gnu: r-bambu: Update to 3.2.6. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.6.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus 6c502065dc
gnu: r-anvil: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.4.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus 17c8517035
gnu: r-cytolib: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.1.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus ad05356b84
gnu: r-enrichplot: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.1.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus 607214f953
gnu: r-lefser: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.10.1.
[propagated-inputs]: Add r-s4vectors.
 2023-08-28 22:15:46 +02:00
Ricardo Wurmus 88f973a21b
gnu: r-rtracklayer: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.1.
[inputs]: Add openssl.
 2023-08-28 22:15:46 +02:00
Nicolas Goaziou ea88bef3e0
gnu: texlive-texdoc: Fix script. 
* gnu/packages/tex.scm (texlive-texdoc)[arguments]<#phases>: Prevent
a warning, and, more importantly, an error when using `texdoc' command.

Reported-by: Emmanuel Beffara <manu@beffara.org>
 2023-08-28 19:50:17 +02:00
Ricardo Wurmus c8a642de9a
import-utils: Do not include punctuation when wrapping in @code{}. 
* guix/import/utils.scm (beautify-description): Exclude punctuation.
* tests/import-utils.scm: Add new test.
 2023-08-28 19:08:38 +02:00
Ricardo Wurmus b4c7fe02ae
gnu: Add r-lea. 
* gnu/packages/bioconductor.scm (r-lea): New variable.
 2023-08-28 18:06:50 +02:00