e7ab3d33ae
challenge: Do nothing when passed zero arguments.
...
Previously, 'guix challenge' without arguments would list live store
items that had been locally built. This was deemed confusing,
especially since 'list-live' is an expensive operation.
* guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when
FILES is empty.
* doc/guix.texi (Invoking guix challenge): Update accordingly.
2022-07-03 01:41:06 +02:00
4745be8514
gnu: r-ifultools: Patch in removed macros to fix build.
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* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
2022-07-02 23:56:10 +02:00
a0142125e6
gnu: r-with-tests: Update to 4.2.1.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02 23:56:10 +02:00
3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02 23:56:10 +02:00
af06365a3e
gnu: r-bionetstat: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02 23:56:10 +02:00
26981da96b
gnu: r-bgeedb: Update to 2.22.3.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02 23:56:10 +02:00
5f03154c15
gnu: r-ggbio: Update to 1.44.1.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02 23:56:10 +02:00
11f30bfa3d
gnu: r-rsubread: Update to 2.10.4.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02 23:56:10 +02:00
0a5a06ed24
gnu: r-biosigner: Update to 1.24.2.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
fbb6489abd
gnu: r-ropls: Update to 1.28.2.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
4aabb20226
gnu: r-genomicscores: Update to 2.8.2.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
2022-07-02 23:56:10 +02:00
b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02 23:56:10 +02:00
a17b7aabfd
gnu: r-batchelor: Update to 1.12.3.
...
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02 23:56:10 +02:00
7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02 23:56:10 +02:00
605eda07df
gnu: r-zellkonverter: Update to 1.6.3.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02 23:56:09 +02:00
febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02 23:56:09 +02:00
c4113d3035
gnu: r-rtracklayer: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02 23:56:09 +02:00
5298b57d56
gnu: r-organismdbi: Update to 1.38.1.
...
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02 23:56:09 +02:00
4e6026031a
gnu: r-limma: Update to 3.52.2.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02 23:56:09 +02:00
103d4d918f
gnu: r-ensembldb: Update to 2.20.2.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02 23:56:09 +02:00
5888776c87
gnu: r-gld: Update to 2.6.5.
...
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02 23:56:09 +02:00
1f6de97557
gnu: r-clubsandwich: Update to 0.5.7.
...
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02 23:56:09 +02:00
f6c9920f62
gnu: r-ranger: Update to 0.14.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
2022-07-02 23:56:09 +02:00
9360df02d1
gnu: r-car: Update to 3.1-0.
...
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
2022-07-02 23:56:09 +02:00
2998060a53
gnu: r-gtools: Update to 3.9.2.2.
...
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
2022-07-02 23:56:09 +02:00
e9f9791b14
gnu: r-r-rsp: Update to 0.45.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
2022-07-02 23:56:09 +02:00
7d7712c9a0
gnu: r-r-utils: Update to 2.12.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
2022-07-02 23:56:09 +02:00
c37911f090
gnu: r-r-methodss3: Update to 1.8.2.
...
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
2022-07-02 23:56:08 +02:00
eae36e7aed
gnu: r-rcpparmadillo: Update to 0.11.2.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
2022-07-02 23:56:08 +02:00
a12211cd93
gnu: r-dbplyr: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
2022-07-02 23:56:08 +02:00
1e57895c5c
gnu: r-rlang: Update to 1.0.3.
...
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3.
2022-07-02 23:56:08 +02:00
2ddb659da1
gnu: r-dbi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3.
2022-07-02 23:56:08 +02:00
54c86cf5f8
gnu: r-nlme: Update to 3.1-158.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158.
2022-07-02 23:56:08 +02:00
764938a242
gnu: r-spacetime: Update to 1.2-8.
...
* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:08 +02:00
621a3350c4
gnu: r-pkgdown: Update to 2.0.5.
...
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5.
2022-07-02 23:56:08 +02:00
3b656f1caf
gnu: r-downlit: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-downlit): Update to 0.4.1.
[propagated-inputs]: Add r-withr.
2022-07-02 23:56:08 +02:00
b16b702db7
gnu: r-clustree: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-clustree): Update to 0.5.0.
2022-07-02 23:56:08 +02:00
6e5a09f701
gnu: r-phangorn: Update to 2.9.0.
...
* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0.
[propagated-inputs]: Add r-generics.
2022-07-02 23:56:08 +02:00
b427be3510
gnu: r-parsnip: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2022-07-02 23:56:08 +02:00
0a33bc0cba
gnu: r-tidyposterior: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0.
2022-07-02 23:56:08 +02:00
2b09daaf71
gnu: r-dials: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-dials): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2022-07-02 23:56:07 +02:00
1c01ab0a84
gnu: r-rsample: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-rsample): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar.
2022-07-02 23:56:07 +02:00
67c83e104c
gnu: r-lobstr: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits.
2022-07-02 23:56:07 +02:00
6cbcdb0369
gnu: r-igraph: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-igraph): Update to 1.3.2.
2022-07-02 23:56:07 +02:00
0fd0ee6c4d
gnu: r-flexsurv: Update to 2.2.
...
* gnu/packages/cran.scm (r-flexsurv): Update to 2.2.
[propagated-inputs]: Add r-ggplot2 and r-statmod.
2022-07-02 23:56:07 +02:00
092c5d941e
gnu: r-hardhat: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-hardhat): Update to 1.2.0.
2022-07-02 23:56:07 +02:00
1c16b70698
gnu: r-packrat: Update to 0.8.1.
...
* gnu/packages/cran.scm (r-packrat): Update to 0.8.1.
2022-07-02 23:56:07 +02:00
ec2a12025e
gnu: r-additivitytests: Update to 1.1-4.1.
...
* gnu/packages/cran.scm (r-additivitytests): Update to 1.1-4.1.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:07 +02:00
9ccb54d8de
gnu: r-fda: Update to 6.0.4.
...
* gnu/packages/cran.scm (r-fda): Update to 6.0.4.
2022-07-02 23:56:07 +02:00
efeb6ba6a1
gnu: r-r-devices: Update to 2.17.1.
...
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.1.
2022-07-02 23:56:07 +02:00
Ludovic Courtès
Ricardo Wurmus